View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5795-Insertion-3 (Length: 89)

Name: NF5795-Insertion-3
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5795-Insertion-3
NF5795-Insertion-3
[»] chr1 (3 HSPs)
chr1 (8-88)||(52226961-52227041)
chr1 (24-88)||(47805485-47805549)
chr1 (13-72)||(29111403-29111462)
[»] chr5 (1 HSPs)
chr5 (37-88)||(19985867-19985918)
[»] chr7 (1 HSPs)
chr7 (13-67)||(30434163-30434217)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 52226961 - 52227041
Alignment:
Q  8 actttctttgctccgagttgctaaggtcactggtggtgcacccaacaagctctccaaaatgtaaaaatccaatctttattg 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52226961 actttctttgctccgagttgctaaggtcactggtggtgcacccaacaagctctccaaaatgtaaaaatccaatctttattg 52227041  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 47805485 - 47805549
Alignment:
Q  24 gttgctaaggtcactggtggtgcacccaacaagctctccaaaatgtaaaaatccaatctttattg 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  47805485 gttgctaaggtcactggtggtgcacccaacaagctctccaagatgtaaaaatcgattctttattg 47805549  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 29111462 - 29111403
Alignment:
Q  13 ctttgctccgagttgctaaggtcactggtggtgcacccaacaagctctccaaaatgtaaa 72  Q
    ||||||||||||| || || ||||| || |||||||| ||||||||||| ||||||||||    
T  29111462 ctttgctccgagtcgccaaagtcaccggcggtgcacctaacaagctctctaaaatgtaaa 29111403  T

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Target: chr5 (Bit Score: 36; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 19985918 - 19985867
Alignment:
Q  37 ctggtggtgcacccaacaagctctccaaaatgtaaaaatccaatctttattg 88  Q
    |||||||||||||||||||||||||||| ||||||||||  | |||||||||    
T  19985918 ctggtggtgcacccaacaagctctccaagatgtaaaaattgattctttattg 19985867  T

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Target: chr7 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 30434217 - 30434163
Alignment:
Q  13 ctttgctccgagttgctaaggtcactggtggtgcacccaacaagctctccaaaat 67  Q
    |||||||||| |||||||||| |||| | | |||||||||||| |||||||||||    
T  30434217 ctttgctccgtgttgctaaggccactcgggctgcacccaacaatctctccaaaat 30434163  T

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