View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5795-Insertion-5 (Length: 697)

Name: NF5795-Insertion-5
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5795-Insertion-5
NF5795-Insertion-5
[»] chr7 (21 HSPs)
chr7 (11-697)||(47678745-47679429)
chr7 (390-697)||(28517090-28517397)
chr7 (390-682)||(5825270-5825560)
chr7 (390-682)||(4501256-4501547)
chr7 (390-668)||(43856871-43857149)
chr7 (560-697)||(45613645-45613782)
chr7 (390-678)||(19277290-19277578)
chr7 (390-504)||(22197983-22198097)
chr7 (390-504)||(22239724-22239838)
chr7 (390-610)||(32584598-32584818)
chr7 (390-681)||(982946-983237)
chr7 (557-697)||(3676804-3676944)
chr7 (399-517)||(30216040-30216159)
chr7 (390-488)||(9281143-9281241)
chr7 (390-488)||(9292114-9292212)
chr7 (390-502)||(27521468-27521580)
chr7 (390-479)||(40726501-40726590)
chr7 (638-697)||(32585392-32585451)
chr7 (430-479)||(10032192-10032241)
chr7 (390-518)||(10905115-10905243)
chr7 (423-484)||(45613858-45613919)
[»] chr5 (15 HSPs)
chr5 (389-682)||(27336689-27336982)
chr5 (390-697)||(13166713-13167020)
chr5 (390-697)||(35310445-35310752)
chr5 (392-697)||(33691859-33692163)
chr5 (557-697)||(38446330-38446470)
chr5 (398-669)||(32269628-32269899)
chr5 (390-520)||(37873617-37873748)
chr5 (535-681)||(433435-433580)
chr5 (560-697)||(15291829-15291966)
chr5 (559-697)||(26212385-26212524)
chr5 (421-682)||(43129562-43129822)
chr5 (589-670)||(34335533-34335614)
chr5 (557-680)||(9841146-9841270)
chr5 (390-478)||(42921694-42921782)
chr5 (419-492)||(16017200-16017273)
[»] chr2 (21 HSPs)
chr2 (390-682)||(28224997-28225289)
chr2 (392-697)||(4412869-4413174)
chr2 (391-697)||(27502360-27502665)
chr2 (557-697)||(17344802-17344942)
chr2 (390-697)||(41867711-41868018)
chr2 (391-697)||(44686414-44686722)
chr2 (559-697)||(19161586-19161724)
chr2 (557-682)||(18744772-18744897)
chr2 (390-501)||(34814818-34814928)
chr2 (560-658)||(10579621-10579719)
chr2 (431-518)||(16351822-16351910)
chr2 (390-486)||(18744968-18745064)
chr2 (557-697)||(23484741-23484881)
chr2 (557-608)||(7760738-7760789)
chr2 (563-697)||(9675014-9675148)
chr2 (557-682)||(3825891-3826016)
chr2 (390-478)||(17344635-17344723)
chr2 (431-504)||(3968405-3968478)
chr2 (557-682)||(9685233-9685358)
chr2 (390-518)||(5532417-5532545)
chr2 (390-470)||(20142755-20142835)
[»] chr1 (22 HSPs)
chr1 (390-697)||(34644563-34644870)
chr1 (390-697)||(29169597-29169903)
chr1 (390-697)||(28040930-28041237)
chr1 (557-697)||(37932021-37932161)
chr1 (397-492)||(22346899-22346994)
chr1 (557-694)||(37200146-37200281)
chr1 (390-517)||(4861971-4862099)
chr1 (419-518)||(19035473-19035573)
chr1 (641-697)||(22347125-22347181)
chr1 (557-613)||(45659534-45659590)
chr1 (390-485)||(24177526-24177621)
chr1 (390-489)||(38731606-38731705)
chr1 (397-518)||(2764483-2764605)
chr1 (390-504)||(20259793-20259907)
chr1 (390-488)||(21473000-21473098)
chr1 (435-504)||(7433265-7433334)
chr1 (390-478)||(2898699-2898786)
chr1 (451-518)||(50161398-50161466)
chr1 (599-658)||(22375479-22375538)
chr1 (563-680)||(38731750-38731867)
chr1 (560-656)||(4861833-4861929)
chr1 (425-501)||(36486918-36486994)
[»] chr4 (21 HSPs)
chr4 (397-697)||(50000728-50001029)
chr4 (390-694)||(31847084-31847388)
chr4 (419-697)||(30940542-30940819)
chr4 (390-682)||(12918190-12918482)
chr4 (535-697)||(3330093-3330254)
chr4 (567-697)||(25706683-25706813)
chr4 (557-697)||(26521652-26521792)
chr4 (390-606)||(53619583-53619799)
chr4 (390-518)||(55933443-55933570)
chr4 (557-662)||(25504457-25504562)
chr4 (390-504)||(600688-600802)
chr4 (560-662)||(56461945-56462047)
chr4 (390-485)||(50483211-50483306)
chr4 (397-518)||(132389-132511)
chr4 (390-470)||(3329993-3330073)
chr4 (578-662)||(18534585-18534669)
chr4 (390-488)||(25504292-25504390)
chr4 (390-488)||(56462118-56462216)
chr4 (390-470)||(7536601-7536681)
chr4 (557-613)||(53170671-53170727)
chr4 (638-682)||(53170746-53170790)
[»] chr8 (10 HSPs)
chr8 (435-697)||(39434709-39434971)
chr8 (402-697)||(25021617-25021912)
chr8 (390-697)||(35739790-35740096)
chr8 (420-682)||(500254-500516)
chr8 (398-517)||(6592580-6592700)
chr8 (400-488)||(6618291-6618379)
chr8 (397-678)||(24125032-24125313)
chr8 (390-488)||(38815291-38815389)
chr8 (425-477)||(8115843-8115895)
chr8 (390-470)||(37514218-37514298)
[»] chr6 (12 HSPs)
chr6 (390-697)||(34304493-34304800)
chr6 (557-697)||(357520-357660)
chr6 (390-681)||(4206415-4206706)
chr6 (557-697)||(12401495-12401635)
chr6 (397-606)||(33220605-33220814)
chr6 (390-518)||(17249286-17249415)
chr6 (557-697)||(32115853-32115993)
chr6 (390-488)||(4165934-4166032)
chr6 (390-680)||(45489-45787)
chr6 (397-488)||(959584-959675)
chr6 (421-488)||(34415464-34415531)
chr6 (557-613)||(28543539-28543595)
[»] chr3 (20 HSPs)
chr3 (398-697)||(39583032-39583331)
chr3 (390-697)||(7900855-7901156)
chr3 (390-697)||(52741314-52741622)
chr3 (390-697)||(53785706-53786013)
chr3 (424-697)||(44198798-44199071)
chr3 (419-681)||(49017989-49018251)
chr3 (390-488)||(32546792-32546890)
chr3 (560-662)||(29861964-29862066)
chr3 (390-504)||(37132995-37133109)
chr3 (419-517)||(4473087-4473186)
chr3 (463-678)||(13582579-13582796)
chr3 (390-518)||(3443293-3443422)
chr3 (390-518)||(26772755-26772884)
chr3 (638-682)||(38146305-38146349)
chr3 (557-697)||(52411705-52411845)
chr3 (390-441)||(21552665-21552716)
chr3 (390-492)||(26856770-26856872)
chr3 (397-501)||(7502010-7502115)
chr3 (390-458)||(5338640-5338708)
chr3 (638-682)||(37992577-37992621)
[»] scaffold1768 (1 HSPs)
scaffold1768 (557-682)||(2-127)
[»] scaffold0148 (1 HSPs)
scaffold0148 (390-697)||(33247-33554)
[»] scaffold0470 (1 HSPs)
scaffold0470 (400-488)||(7609-7697)
[»] scaffold0490 (2 HSPs)
scaffold0490 (390-518)||(6331-6460)
scaffold0490 (557-602)||(6497-6542)
[»] scaffold0009 (1 HSPs)
scaffold0009 (397-470)||(103110-103183)


Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 11 - 697
Target Start/End: Original strand, 47678745 - 47679429
Alignment:
Q  11 tgcatgctgaacagggaaatataagcacattatgctcttaatagcatataattcctgttcgggatttctgccattaattatgtctgctcttgtctcaatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678745 tgcatgctgaacagggaaatataagcacattatgctcttaatagcatataattcctgttcgggatttctgccattaattatgtctgctcttgtctcaatg 47678844  T
Q  111 gactttagttctctcttggaataatttgttgggctagttggtttcattattctttttcttttggggggtaaacttccagcattttgttattcaaagtgaa 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678845 gactttagttctctcttggaataatttgttgggctggttggtttcattattctttttcttttggggggtaaacttccagcattttgttattcaaagtgaa 47678944  T
Q  211 atacgtaccagtactatttattccttgaccatgctgttagatgtagggttataaaactgggattttcacgtgtatagtattctggttgtcgtttatgtta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47678945 atacgtaccagtactatttattccttgaccatgctgttagatgtagggttataaaactgggattttcacgtgtatagtattctggttgttgtttatgtta 47679044  T
Q  311 aaacacaaaatacaaacaattttaagtttcaaaaatattaataatcacatcgatcaataatannnnnnnaaggaagcgtctctatttagaaggtcaacaa 410  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||    
T  47679045 aaaca-aaaataaaaacaattttaagtttcaaaaatattaataatcacatcgatcaataata-ttttttaaggaagcatctctatttagaaggtcaacaa 47679142  T
Q  411 tctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgctgacgca 510  Q
     |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47679143 cctgtgatgctaggaaaccgaaaatgtcaaacgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttgtcactttgctgacgca 47679242  T
Q  511 acttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaac 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  47679243 acttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctacc 47679342  T
Q  611 cattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47679343 cattcgcacgccattacattcgtaagtcaaagtgtcgatcttctatctagtgcgtcagtcagaaagttcacacgcgactccttcttc 47679429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 390 - 697
Target Start/End: Complemental strand, 28517397 - 28517090
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||  ||| ||| ||||||||  | ||| ||||||| |||||| ||||||||  || ||||||||   ||||| |||||||||     
T  28517397 ctctatgtagaaggtcaactgtctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacacgctttctcatg 28517298  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||||| |||||| ||||||| | |    |||||  |||||||||| | |||||||| ||| |||||||||||||||| ||||||||| |     
T  28517297 tttggccactttgcttgacgcagcttttagggttgtctgtcctactgtaaaagcccccacccctaaaccc-acaagtggtgaaaccccagtcaagtccac 28517199  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||  |||||||||||| | |||| ||||| |||| ||||| | | | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  28517198 acatacatgttttcctccaacccatccgtacaccataacatttgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacaggcgcc 28517099  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  28517098 tccttcttc 28517090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 390 - 682
Target Start/End: Original strand, 5825270 - 5825560
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  |||||||  |||||| ||||||| | |||| ||||||||  || |||||||| | ||||| | || ||||     
T  5825270 ctctatgtagaaggtcaacaacctctggtgctaggatgccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtcataacacgcattgtcatg 5825369  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||||| || ||| ||||||| | | |  |||||   ||||||||| | |||||||| ||| |||||||||||||||| ||||||||| |     
T  5825370 tttg--cactttgcttgatgcagcttttagggcttcctgtcctgccgtaaaagcctcgacccctaaaccc-acaagtggtgaaaccccagtcaagtccac 5825466  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
    ||||| |||||||||||| | |||||||||| |||| |||| || | | ||| ||||||||||||||||||||| |||| ||||||||||||||    
T  5825467 acatgcatgttttcctccaacccattcgtacaccataacatccgcaggcctatgtgtcgatcttctatctagtgggtcaatcagaaagttcaca 5825560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 682
Target Start/End: Original strand, 4501256 - 4501547
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  ||||| ||||| ||| ||||||| ||||||  |||||||| || |||||||| ||||||| |||||||||     
T  4501256 ctctatgtagaaggtcaacaacctctggtgctagaaaacc-aaagtgtcaaaagcaaattatataaaagcatgttgattgtcagaacacgctttctcatg 4501354  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||| | |||||| ||||||| | |  | |||||   ||||||| | | || ||||| ||| |||||||||||||||| |||||||||||     
T  4501355 tttggccactttgtttgacgcagcttttagggttgtttgtcctacggtaaaaggcccgacacctaatccc-acaagtggtgaaaccccagtcaagtctac 4501453  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
    ||||| |||||||||||||| | || ||||| |||| |||| ||   | || |||||  ||||||||||||||| |||| |||| |||||||||    
T  4501454 acatgcatgttttcctcctacctatccgtacaccataacatccgctggcctgagtgtttatcttctatctagtgggtcattcaggaagttcaca 4501547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 390 - 668
Target Start/End: Original strand, 43856871 - 43857149
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  | ||||||||| ||||||||||| |||||| ||||||| | || |||||||| | ||||| |||||||||     
T  43856871 ctctatgtagaaggtcaacaacctctggtgttaggaaaccaaaaatgtcaaaagcaaattgtataaacgcatgttgattgtcaaaacacgctttctcatg 43856970  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    | |   ||||||| | |||||| ||||||  | |    |||||  |||||||||| | |||||||| ||| ||||||||||||||||  |||||||| |     
T  43856971 tctagccactttgattgacgcatcttttaatgttgtctgtcctactgtaaaagccccgacccctaatccc-acaagtggtgaaacccccgtcaagtccac 43857069  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcag 668  Q
     |||||||||||| |||||| |||| ||||| |||| ||||  | | | |||||||| |||||||||||||||| |||||    
T  43857070 gcatgtatgtttttctcctacccatccgtacaccataacatctgcaggcctaagtgttgatcttctatctagtgggtcag 43857149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 560 - 697
Target Start/End: Complemental strand, 45613782 - 45613645
Alignment:
Q  560 acaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatcta 659  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||  ||| |||| || | | || ||||| |||||||| ||||    
T  45613782 acaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatccgcaggcctgagtgttgatcttctttcta 45613683  T
Q  660 gtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    | | ||||||||| |||||||||  || ||||||||||    
T  45613682 gcgggtcagtcaggaagttcacagacgtctccttcttc 45613645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 678
Target Start/End: Original strand, 19277290 - 19277578
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  ||||||||||||||| ||||||| |||||| ||||||||| || |||||||| ||||||| |||||||||     
T  19277290 ctctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatg 19277389  T
Q  490 ttttatcactttgc-tgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||    ||||||| ||||||| |||||||   | |  |||||   | |||||     |  |||||  || |||||||||||||||| |||||||||||     
T  19277390 tttggctactttgcttgacgcagcttttaggactgcctgtcctacggcaaaaggtctgaaacctaa-tccgacaagtggtgaaaccccagtcaagtctac 19277488  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagtt 678  Q
    ||| | ||||||||| |||| |||| ||||  |||| |||| || | | || ||||| |||||||||||||||| ||||||||| |||||    
T  19277489 acaagcatgttttccacctacccatccgtagaccataacatccgcaggcctgagtgttgatcttctatctagtgcgtcagtcaggaagtt 19277578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 390 - 504
Target Start/End: Original strand, 22197983 - 22198097
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||| ||||||||||||||| || |||| |||||| ||||||||  || ||||||||  ||||||||||||||||     
T  22197983 ctctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatg 22198082  T
Q  490 ttttatcactttgct 504  Q
    |||  ||||||||||    
T  22198083 tttggtcactttgct 22198097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 390 - 504
Target Start/End: Complemental strand, 22239838 - 22239724
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||| ||||||||||||||| || |||| |||||| ||||||||  || ||||||||  ||||||||||||||||     
T  22239838 ctctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatg 22239739  T
Q  490 ttttatcactttgct 504  Q
    |||  ||||||||||    
T  22239738 tttggtcactttgct 22239724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 390 - 610
Target Start/End: Original strand, 32584598 - 32584818
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  ||||||||||  ||| ||||||| |||||| || |||||| || |||||||| |||||||  ||||||||     
T  32584598 ctctatctagaaggtcaacaacctctggtgctaggaaacataaagtgtcaaaagcaaatggtgtaaaagcatcttgattgtcagaacacgttttctcatg 32584697  T
Q  490 ttttatcactttg-ctgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    ||| | |||||||  ||| |||| |||||| | | |  |||||   |||||| || | ||||||||  |||||||| |||||||||| ||||||||| |     
T  32584698 tttgaccactttgtttgatgcaatttttagggttgcatgtcctaccgtaaaatccccgacccctaa-tcccacaagaggtgaaacccgagtcaagtccac 32584796  T
Q  589 acatgtatgttttcctcctaac 610  Q
    ||||| ||||||||||| ||||    
T  32584797 acatgcatgttttcctcataac 32584818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 390 - 681
Target Start/End: Original strand, 982946 - 983237
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||| |||||| || ||  ||||| ||||||||| | ||||| |||||| ||||||||| || |||||||| |||||||  ||||||||     
T  982946 ctctatgtagaaggccaacaacctctggtgctagaaaaccgaaagtatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgatttctcatg 983045  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||||| |||||| ||||||  | | |  |||||    ||||||   | || ||||| ||| ||||||||| ||||||||||||||||||     
T  983046 tttggccactttgcttgacgcagcttttatggctgcctgtcctacaataaaaggtcccacacctaatccc-acaagtggttaaaccctagtcaagtctac 983144  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcac 681  Q
    ||| | ||||||| | ||||  |||||||||  ||| || | || | | || ||||| |||||||||||||||| |||||| || ||||||||    
T  983145 acaagcatgtttttcacctactcattcgtacatcataacttccggatgcctgagtgttgatcttctatctagtgggtcagttaggaagttcac 983237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 697
Target Start/End: Original strand, 3676804 - 3676944
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||||| ||||||||||| ||| | ||||||||| |||| |||| | ||| |||| ||||    ||| || ||||| ||| ||||||    
T  3676804 cccacaagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccctacaccataacatctacaagcctgagtgttgattttctat 3676903  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    ||| || ||||||||| ||||||||| | | ||||||||||    
T  3676904 ctattgggtcagtcaggaagttcacaggtgcctccttcttc 3676944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 517
Target Start/End: Complemental strand, 30216159 - 30216040
Alignment:
Q  399 gaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcac 498  Q
    |||| ||||||| || ||| ||||||||||||||| ||||||| |||||| ||||||||  || |||||||| | ||||| ||||||||||||| | ||     
T  30216159 gaagatcaacaaactctgatgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcaaaacacgctttctcatatttgaccat 30216060  T
Q  499 tttgc-tgacgcaactttta 517  Q
    ||||| ||||||| ||||||    
T  30216059 tttgcttgacgcagctttta 30216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 9281241 - 9281143
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||| ||||||||||||||  | ||  |||||||| |  |||||||||||| ||||||||||||||| || |||||||| ||||||| |||||||||    
T  9281241 ctctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacgctttctcat 9281143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 9292212 - 9292114
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||| ||||||||||||||  | ||  |||||||| |  |||||||||||| ||||||||||||||| || |||||||| ||||||| |||||||||    
T  9292212 ctctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacgctttctcat 9292114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 390 - 502
Target Start/End: Original strand, 27521468 - 27521580
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||| ||||||||||| ||| ||||||| | |||| ||||||| | || |||||||| |||||||  ||||||||     
T  27521468 ctctatgtagaaggtcaacaacctctgatgctaggaaaccaaaagtgtcaaaagtaaattgtataaatgcatgttgattgtcagaacacgttttctcatg 27521567  T
Q  490 ttttatcactttg 502  Q
    ||| | |||||||    
T  27521568 tttgaccactttg 27521580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 479
Target Start/End: Complemental strand, 40726590 - 40726501
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacaca 479  Q
    |||||| |||||||||||||| || ||| |||| ||| |||||| |||||||  ||||| ||||||||  || |||||||| ||||||||    
T  40726590 ctctatgtagaaggtcaacaacctctgatgctatgaagccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtcagaacaca 40726501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 697
Target Start/End: Original strand, 32585392 - 32585451
Alignment:
Q  638 ctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    ||||||||| ||||| ||||||||  |||| |||||||||||||| ||| ||||||||||    
T  32585392 ctaagtgtcaatcttttatctagtaggtcattcagaaagttcacatgcgcctccttcttc 32585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 10032241 - 10032192
Alignment:
Q  430 gaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacaca 479  Q
    |||||| ||||| |||||||||||||||  ||||||||||| ||||||||    
T  10032241 gaaaatatcaaaagcaaatagtataaaaacatattgattgtcagaacaca 10032192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 10905115 - 10905243
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||  || ||  |||||| |||| ||| ||||||| |||||| |||| |||| || |||| ||| |||||||  |||||||||    
T  10905115 ctctatgtagaaggtcaacatactctggtgctaggcaaccaaaagtgtcaaaagcaaatggtat-aaagcatgttgagtgtcagaacactttttctcata 10905213  T
Q  490 ttttatcactttgc-tgacgcaacttttag 518  Q
    |||   |||||||| ||||||| |||||||    
T  10905214 tttggccactttgcttgacgcagcttttag 10905243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 484
Target Start/End: Complemental strand, 45613919 - 45613858
Alignment:
Q  423 ggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttc 484  Q
    ||||||||||| |||||||  ||||| ||||||||  || |||||||| |||||||||||||    
T  45613919 ggaaaccgaaagtgtcaaaatcaaatggtataaaaacatgttgattgtcagaacacactttc 45613858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 389 - 682
Target Start/End: Original strand, 27336689 - 27336982
Alignment:
Q  389 tctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    ||||||| ||||||||||||   || ||| |||||||| ||  || ||||||| |||||| |||||||||||| |||||||| |||||||  ||||||||    
T  27336689 tctctatgtagaaggtcaactgcctctgatgctaggaagccacaagtgtcaaaagcaaatggtataaaagtatgttgattgtcagaacacgatttctcat 27336788  T
Q  489 attttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtcta 587  Q
     ||| | ||||||||| |||||||||||||| | |    ||||| ||||||||||| | |||||||| ||| |||||||||||||||| ||||||||| |    
T  27336789 gtttgaccactttgcttgacgcaacttttagggctgtctgtcctattgtaaaagcccccacccctaaaccc-acaagtggtgaaaccccagtcaagtcca 27336887  T
Q  588 gacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
     ||||| |||||||||||| | |||| ||||| |||| |||| || | | ||||||||||||||||||||||||| |||||||||||||||||||    
T  27336888 cacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcaca 27336982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 390 - 697
Target Start/End: Complemental strand, 13167020 - 13166713
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||| ||| ||| |||||||| |||||| ||||||| |||||| ||||||||| || |||||||| ||||||| |||||||||     
T  13167020 ctctatgtagaaggtcaacagtctctgatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatg 13166921  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||||| ||||||  |||||| | |    ||||    |||||||||   |||| |||   |||||||||||||||||| ||||||||| |     
T  13166920 tttagccactttgcttgacgcagattttagggttgtctgtcccaccgtaaaagccctaacccataaaatccacaagtggtgaaaccc-agtcaagtccac 13166822  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| |||||||||||| | |||| ||||  |||| |||| || | |  |||||||||||||||||||||||| ||||||||||||||||||| |||      
T  13166821 acatgcatgttttcctccaacccatccgtagaccataacatccgcatgcttaagtgtcgatcttctatctagtgggtcagtcagaaagttcacaggcgct 13166722  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  13166721 tccttcttc 13166713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 390 - 697
Target Start/End: Original strand, 35310445 - 35310752
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||| ||||  || ||| || ||||| |||||| ||||||| ||| || ||||||||| || |||||||| ||||||  |||||||||     
T  35310445 ctctatgtagaaggttaacagcctctgatgccaggaagccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtcagaacatgctttctcatg 35310544  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||||| |||||| ||||||| | |    |||||   ||||||||| | |||||||| ||| |||||||||||||||| | ||||||| |     
T  35310545 tttggccactttgcttgacgcatcttttagggttgtctgtcctaccgtaaaagccccgacccctaaaccc-acaagtggtgaaaccccaatcaagtccac 35310643  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| |||||||||||| | |||| |||||  ||| |||| || ||| |||||||| |||||||||||||||| |||||| || ||||||||| ||| |    
T  35310644 acatgcatgttttcctccaacccatccgtacatcataacatccgcaagcctaagtgttgatcttctatctagtgggtcagttaggaagttcacaggcgcc 35310743  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  35310744 tccttcttc 35310752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 392 - 697
Target Start/End: Complemental strand, 33692163 - 33691859
Alignment:
Q  392 ctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatatt 491  Q
    |||| ||||||||||||| ||| ||| |||| ||| |||||| ||||||| |||||| ||| ||||| || |||||||| | |||||  ||| |||| ||    
T  33692163 ctatgtagaaggtcaacagtctctgatgctaagaagccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtt 33692064  T
Q  492 ttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagac 590  Q
    |   ||||||||| |||||| |||||||   | |  |||||   ||||||||| | |||||||| ||| |||||||||||||||  ||||||||| | ||    
T  33692063 tggccactttgcttgacgcagcttttaggcctgcctgtcctaccgtaaaagccccgacccctaaaccc-acaagtggtgaaacctcagtcaagtccacac 33691965  T
Q  591 atgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactc 690  Q
    ||| |||||||||||| | |||| ||||| |||| ||||| | | |  |||||||||||||||||||||| | |||||||||||||||| || ||| |||    
T  33691964 atgcatgttttcctccaacccatccgtacaccataacatttgcaggcttaagtgtcgatcttctatctag-gggtcagtcagaaagttcgcaagcgcctc 33691866  T
Q  691 cttcttc 697  Q
    |||||||    
T  33691865 cttcttc 33691859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 557 - 697
Target Start/End: Original strand, 38446330 - 38446470
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||||  ||||||||| | ||||| ||||||| |||| | |||| ||||| |||| ||||| | | | |||||||||||| ||||||    
T  38446330 cccacaagtggtgaaacctcagtcaagtccacacatgcatgttttactccaacccatccgtacaccataacatttgcatgcctaagtgtcgatattctat 38446429  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    |||| | |||||||||||| |||||| ||| ||||||||||    
T  38446430 ctagagggtcagtcagaaaattcacatgcgcctccttcttc 38446470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 398 - 669
Target Start/End: Complemental strand, 32269899 - 32269628
Alignment:
Q  398 agaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatca 497  Q
    ||||||||||||| || |   ||||||||| ||||| | ||||| |||||| |||||||||  | |||||||| ||||||||||||||||| ||| | ||    
T  32269899 agaaggtcaacaacctctagtgctaggaaatcgaaagtatcaaaagcaaatggtataaaagcgtgttgattgtcagaacacactttctcatgtttgacca 32269800  T
Q  498 ctttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtat 596  Q
    ||||| | || ||| ||||||| | | |  |||||    |||||| | | || |||||  || | |||||||||||||| ||||||||||| ||||| ||    
T  32269799 ctttggttgatgcagcttttagggttgcatgtcctaccataaaaggcccgacacctaattcc-agaagtggtgaaaccccagtcaagtctacacatgcat 32269701  T
Q  597 gttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagt 669  Q
    |||||||||||| |||| ||||| |||| ||||  | |  | | ||||| |||||||||||||||| ||||||    
T  32269700 gttttcctcctacccatccgtacaccataacatctgcagatttgagtgttgatcttctatctagtgggtcagt 32269628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 390 - 520
Target Start/End: Complemental strand, 37873748 - 37873617
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  |||||||| || ||| ||||||| |||||| ||||||||  || |||||||| ||||||| |||||||||     
T  37873748 ctctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttctcatg 37873649  T
Q  490 ttttatcactttgc-tgacgcaacttttagag 520  Q
    |||   |||||||| |||||||||||||||||    
T  37873648 tttggccactttgcttgacgcaacttttagag 37873617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 681
Target Start/End: Original strand, 433435 - 433580
Alignment:
Q  535 gtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgta 634  Q
    ||||||||| |||||| ||| ||| ||| ||||||||||||  |||||||| | ||||| || ||||||||| | ||||  |||| |||| |||| || |    
T  433435 gtaaaagcccctacccttaaaccc-acaggtggtgaaaccccggtcaagtccacacatgcatattttcctccaacccatctgtacaccataacatccgca 433533  T
Q  635 agtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcac 681  Q
     | |||||||| |||||||||| ||||| | ||||||||||||||||    
T  433534 tgcctaagtgtggatcttctatttagtgggccagtcagaaagttcac 433580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 697
Target Start/End: Complemental strand, 15291966 - 15291829
Alignment:
Q  560 acaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatcta 659  Q
    |||||||||||||||  | ||||||||| |||   |||||||||||||| |||  ||||| |||| ||||||| | | || ||||| |||||||||||||    
T  15291966 acaagtggtgaaacctcattcaagtctacacaaacatgttttcctcctacccagccgtacaccataacattcgcaggcctgagtgttgatcttctatcta 15291867  T
Q  660 gtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    ||| ||||||  | ||||||||| |||  |||||||||    
T  15291866 gtgggtcagttgggaagttcacaggcgcttccttcttc 15291829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 559 - 697
Target Start/End: Complemental strand, 26212524 - 26212385
Alignment:
Q  559 cacaagtggtgaaaccctagtcaagtctagacatgtatgtttt-cctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatc 657  Q
    |||||||| |||||||| |||||| |||| ||||| || |||| || |||| |||  ||||| |||| ||||  | | | || ||||| |||||||||||    
T  26212524 cacaagtgatgaaaccccagtcaaatctacacatgcatttttttccacctagccacccgtacaccatcacatctgcatgcctgagtgttgatcttctatc 26212425  T
Q  658 tagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    ||||| ||||||||| ||||||||| ||| ||||||||||    
T  26212424 tagtgggtcagtcaggaagttcacaggcgcctccttcttc 26212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 682
Target Start/End: Original strand, 43129562 - 43129822
Alignment:
Q  421 taggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgct-gacgcaacttttaga 519  Q
    ||||||||||||||||||||| |||||| ||| ||||  || |||||||| |||||||  |||||||| ||| | ||||||||| |||||| |||||||     
T  43129562 taggaaaccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttgaccactttgcttgacgcatcttttagg 43129661  T
Q  520 gatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtac 619  Q
      |    ||||    |||||||   | |||||||| ||  |||||||||||||||| |||||| |  | ||||| || ||||||||||| |||| |||||    
T  43129662 actgaatgtccaaccgtaaaagttccgacccctaatcca-acaagtggtgaaaccccagtcaatttcacacatgcat-ttttcctcctatccatccgtac 43129759  T
Q  620 gccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
      ||| ||||  | | | ||||||||||||||||||||||||   ||||| ||||||||||||    
T  43129760 atcataacatctgcatgcctaagtgtcgatcttctatctagtagatcagtaagaaagttcaca 43129822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 670
Target Start/End: Original strand, 34335533 - 34335614
Alignment:
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtc 670  Q
    ||||| ||||||||||||||  |||| |||| |||| ||||  | ||| ||||||||||||||||||||||||| |||||||    
T  34335533 acatgcatgttttcctcctactcatttgtacaccataacatatgcaagcctaagtgtcgatcttctatctagtgggtcagtc 34335614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 680
Target Start/End: Complemental strand, 9841270 - 9841146
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattc-gtacgccattacattcgtaagtctaagtgtcgatcttcta 655  Q
    ||||||||||||||||||||| |||||| || ||| | ||||||| || ||| |||| | | || |||| |||| || | | ||||||||||||||||||    
T  9841270 cccacaagtggtgaaaccctactcaagtttacacacgcatgtttttcttctacccatcccgcacaccataacatccgcaggcctaagtgtcgatcttcta 9841171  T
Q  656 tctagtgtgtcagtcagaaagttca 680  Q
    ||||||  || |||||| |||||||    
T  9841170 tctagtaggtaagtcaggaagttca 9841146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 42921694 - 42921782
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacac 478  Q
    |||||| ||||||| |||||| || ||  ||||||||||||||| ||||| | |||||| ||||||||| || |||||||| |||||||    
T  42921694 ctctatgtagaaggccaacaacctctggtgctaggaaaccgaaagtgtcataagcaaatggtataaaagcatgttgattgtcagaacac 42921782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 16017200 - 16017273
Alignment:
Q  419 gctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattt 492  Q
    |||||||| || ||| | ||||| ||||||||||| |||  || |||||| | |||||||||||||||||||||    
T  16017200 gctaggaagccaaaagtatcaaacgcaaatagtattaaatcatgttgattattagaacacactttctcatattt 16017273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 7e-48; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 390 - 682
Target Start/End: Original strand, 28224997 - 28225289
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || |||||||||||| |||||| ||||||| |||||| ||||||||| || |||||||| |||| || ||||||||||    
T  28224997 ctctatgtagaaggtcaacaacctctgaagctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctttctcata 28225096  T
Q  490 ttttatcactttgc-tgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||  ||||||||| ||||||| |||||| || |  | |||||   |||||||||   || |||||  ||||||||| ||||||||| | ||||||| |     
T  28225097 tttggtcactttgcttgacgcagcttttaaagttgtttgtcctaccgtaaaagccctaactcctaa-gcccacaagtagtgaaaccccattcaagtccac 28225195  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
    ||||| |||||||||||| | |||| ||||| |||| |||| |||| | |||||||||||| |||||||||||| || ||||||||||||||||    
T  28225196 acatgcatgttttcctccaacccatccgtacaccataacatccgtaggcctaagtgtcgatattctatctagtgggtaagtcagaaagttcaca 28225289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 392 - 697
Target Start/End: Complemental strand, 4413174 - 4412869
Alignment:
Q  392 ctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatatt 491  Q
    |||| ||||||||||||||||| ||  ||||||||||||||| ||||||| |||||| ||||||||| || |||||||| ||||||| ||||||||| ||    
T  4413174 ctatgtagaaggtcaacaatctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtt 4413075  T
Q  492 ttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagac 590  Q
    |   ||||||||| ||| || ||||||| | | |  |||||   |||||||     || | ||| ||| |||||||||||||||| ||||||||||| ||    
T  4413074 tggccactttgcttgacacagcttttagggttgcctgtcctacggtaaaaggtctgacacttaatccc-acaagtggtgaaaccccagtcaagtctacac 4412976  T
Q  591 atgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactc 690  Q
    | | ||||||||| |||| |||| ||||| |||| |||| || | | || ||||| |||||||||||||||| ||||||||| ||||||||| | | |||    
T  4412975 aagcatgttttccacctacccatccgtacaccataacatccgcaggcctgagtgttgatcttctatctagtgggtcagtcaggaagttcacaggtgcctc 4412876  T
Q  691 cttcttc 697  Q
    |||||||    
T  4412875 cttcttc 4412869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 391 - 697
Target Start/End: Original strand, 27502360 - 27502665
Alignment:
Q  391 tctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatat 490  Q
    ||||| ||||||||||||| | | ||| ||||||||  ||||| |||||||    ||| ||||||||| || ||| ||||  ||||||  |||||||| |    
T  27502360 tctatgtagaaggtcaacagtatatgatgctaggaagtcgaaagtgtcaaaaagcaattgtataaaagcatgttgtttgtcggaacacgttttctcatgt 27502459  T
Q  491 tttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctaga 589  Q
    || | ||||||||| |||||| ||||||| | || | ||||| | ||||||||    |||||||| ||| |||||||||||||||| | ||| ||| | |    
T  27502460 ttgaccactttgcttgacgcagcttttagggttatt-gtcctatcgtaaaagctctgacccctaaaccc-acaagtggtgaaaccccattcaggtccaca 27502557  T
Q  590 catgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgact 689  Q
    |||| |||||||||||| | |||| ||||| |||| |||| || | | |||||||||||||||  |||||||| ||||||||||||||||||| ||| ||    
T  27502558 catgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttgcatctagtgggtcagtcagaaagttcacaggcgcct 27502657  T
Q  690 ccttcttc 697  Q
    ||||||||    
T  27502658 ccttcttc 27502665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 557 - 697
Target Start/End: Original strand, 17344802 - 17344942
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||| ||||||||| ||||||||||| ||||| |||||||||||||| |||| ||||| |||| |||| || | | || ||||| |||||||| |    
T  17344802 cccacaagttgtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatccgcatgcctgagtgttgatcttcttt 17344901  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    |||| | ||||||||||||||||||| ||| ||||||||||    
T  17344902 ctagcgggtcagtcagaaagttcacaggcgcctccttcttc 17344942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 390 - 697
Target Start/End: Complemental strand, 41868018 - 41867711
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||  || ||  |||||||| |||||| ||||||| |||||| ||||||||| || |||||||| ||||||  |||||||||     
T  41868018 ctctatgtagaaggtcaacagcctctggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacatgctttctcatg 41867919  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    ||| | ||||||||| |||||| ||||||  | | |  |||||    ||||||   | || ||||| ||| |||||| |||||| |  |||||||||||     
T  41867918 tttgaccactttgcttgacgcagcttttaaggctgcctgtcctacgataaaaggtccgacacctaatccc-acaagtcgtgaaatctcagtcaagtctac 41867820  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||| | ||||||||| |||| ||||  |||| |||| |||| || | | || ||||| |||||||||||||||| ||||||||| ||||||||| | | |    
T  41867819 acaagcatgttttccacctacccatctgtacaccataacatccgcaggcctgagtgttgatcttctatctagtgggtcagtcaggaagttcacaggtgcc 41867720  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  41867719 tccttcttc 41867711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 391 - 697
Target Start/End: Original strand, 44686414 - 44686722
Alignment:
Q  391 tctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtat----attgattgtgagaacacactttctc 486  Q
    ||||| |||||||||||||| || ||| |||||||| |||||| ||||||| || || | |||||||| ||    ||||||||| ||||||| |||||||    
T  44686414 tctatgtagaaggtcaacaaactctgatgctaggaagccgaaagtgtcaaaagcgaacaatataaaagcatgttgattgattgtcagaacacgctttctc 44686513  T
Q  487 atattttatcactttgct-gacgcaacttttagagatactc-gtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagt 584  Q
    || |||   ||| ||||| ||| || ||||||| ||   || ||||| | ||||||||| | |||||||| ||| |||||||||||||||| ||||||||    
T  44686514 atgtttggccacattgcttgac-cagcttttag-gactgtctgtcctatcgtaaaagccccgacccctaaaccc-acaagtggtgaaaccccagtcaagt 44686610  T
Q  585 ctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacg 684  Q
    | | ||||| |||||||| ||| || |||| |||| |||| |||| || | | ||||||||| ||||||||||||||   ||||||| |||||||||| |    
T  44686611 ccacacatgcatgttttcgtcc-aaacatttgtacaccataacatccgcaggcctaagtgtcaatcttctatctagtagatcagtcacaaagttcacagg 44686709  T
Q  685 cgactccttcttc 697  Q
    |  ||||||||||    
T  44686710 cccctccttcttc 44686722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 559 - 697
Target Start/End: Complemental strand, 19161724 - 19161586
Alignment:
Q  559 cacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatct 658  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||| | |||  ||| |||| || | | || ||||| ||||||||||||    
T  19161724 cacaagtggtgaaaccctattcaagtctacacatgcatgttttcctcctacccatccttacatcataacatccgcatgcctgagtgttgatcttctatct 19161625  T
Q  659 agtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    | || |||||| || | |||||||  || ||||||||||    
T  19161624 aatgggtcagttaggacgttcacagacgcctccttcttc 19161586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 557 - 682
Target Start/End: Complemental strand, 18744897 - 18744772
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||| ||||| |||| |||  || | | || ||||| ||| |||| |    
T  18744897 cccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacacccgcaggcctgagtgttgatattcttt 18744798  T
Q  657 ctagtgtgtcagtcagaaagttcaca 682  Q
    |||| | ||||||||| || ||||||    
T  18744797 ctagcgggtcagtcaggaaattcaca 18744772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 501
Target Start/End: Complemental strand, 34814928 - 34814818
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||| ||| ||  | |||||| |||||| |||| || |||||| ||||||||| ||||||||||| ||||||| |||||||||     
T  34814928 ctctatgtagaaggtcaacagtctctggtgttaggaa-ccgaaagtgtcgaaagcaaatggtataaaagcatattgattgtcagaacacgctttctcatg 34814830  T
Q  490 ttttatcacttt 501  Q
    ||| ||||||||    
T  34814829 tttgatcacttt 34814818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 560 - 658
Target Start/End: Complemental strand, 10579719 - 10579621
Alignment:
Q  560 acaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatct 658  Q
    |||||||||||||||| ||||||||| | | ||| |||||||||||||| ||| |||||| |||| ||||| ||  | |||||||||||||||| ||||    
T  10579719 acaagtggtgaaaccccagtcaagtccacaaatgcatgttttcctcctacccactcgtacaccataacatttgttggcctaagtgtcgatcttccatct 10579621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 431 - 518
Target Start/End: Complemental strand, 16351910 - 16351822
Alignment:
Q  431 aaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgc-tgacgcaacttttag 518  Q
    ||||||||||| ||||| | ||||||| ||| ||||||||||||||||| |||||||| ||| | |||||||| |||| ||||||||||    
T  16351910 aaaatgtcaaaagcaaacaatataaaattatgttgattgtgagaacacattttctcatgtttgaccactttgcttgacacaacttttag 16351822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 390 - 486
Target Start/End: Complemental strand, 18745064 - 18744968
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctc 486  Q
    |||||| ||||||| |||||  || ||  ||||| ||| ||||||||||||| |||||| |||||||||||| |||||||| ||||||| |||||||    
T  18745064 ctctatgtagaaggccaacagcctatggtgctagaaaatcgaaaatgtcaaaagcaaatggtataaaagtatgttgattgtcagaacacgctttctc 18744968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 557 - 697
Target Start/End: Complemental strand, 23484881 - 23484741
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||||| | ||||||||| ||||| |||||||||||||| |||| |||||  ||| ||||  | | |  | ||||| ||||||||||    
T  23484881 cccacaagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacatcataacatatgcatgcttgagtgttgatcttctat 23484782  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
     ||||  |||| |||| |||||||||  || ||||||||||    
T  23484781 atagtaggtcaatcaggaagttcacagacgcctccttcttc 23484741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 608
Target Start/End: Complemental strand, 7760789 - 7760738
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctccta 608  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  7760789 cccacaagtggtgaaaccctagtcaagttcacacatgtatgttttcctccta 7760738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 697
Target Start/End: Original strand, 9675014 - 9675148
Alignment:
Q  563 agtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtg 662  Q
    ||||||||||||| | ||||||  | ||||| ||||||||||||||  |||||||||  ||| ||||  | | ||||||||||||||||| ||| || |     
T  9675014 agtggtgaaaccccaatcaagttcatacatgcatgttttcctcctactcattcgtacatcataacatctgcatgtctaagtgtcgatcttttatttaatc 9675113  T
Q  663 tgtcagtcagaaagttcacacgcgactccttcttc 697  Q
     ||| ||||||||||||||| ||| ||| ||||||    
T  9675114 ggtcggtcagaaagttcacaggcgcctcattcttc 9675148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 557 - 682
Target Start/End: Original strand, 3825891 - 3826016
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    |||||||| |||||||||  | ||||||| | ||||| ||||||| ||||||  |||| |||| || | |||| |  |||  |||  |||||||||||||    
T  3825891 cccacaaggggtgaaacctcaatcaagtccacacatgcatgtttttctcctactcatttgtacaccttaacatccacaagcataaaggtcgatcttctat 3825990  T
Q  657 ctagtgtgtcagtcagaaagttcaca 682  Q
    |||||| |||||||||||||||||||    
T  3825991 ctagtgggtcagtcagaaagttcaca 3826016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 17344635 - 17344723
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacac 478  Q
    |||||| |||||||||||||  || ||  |||||||||| |||| ||||||| |||||| ||||||||| || |||||||||| |||||    
T  17344635 ctctatgtagaaggtcaacagcctatggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtgaaaacac 17344723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 504
Target Start/End: Complemental strand, 3968478 - 3968405
Alignment:
Q  431 aaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgct 504  Q
    ||||||||||| |||||| ||||||||| ||||||||||| | ||||   |||||||||||| | |||||||||    
T  3968478 aaaatgtcaaacgcaaattgtataaaagcatattgattgtcaaaacatgttttctcatatttgaccactttgct 3968405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 682
Target Start/End: Complemental strand, 9685358 - 9685233
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||||| ||||||||||| |||   ||||||||| |||| ||||  | || |||| |  || | | | || ||||| || |||||||    
T  9685358 cccacaagtggtgaaaccccagtcaagtctacacaatcatgttttccacctacccatatgcacaccataatgtttgcaggcctgagtgttgaccttctat 9685259  T
Q  657 ctagtgtgtcagtcagaaagttcaca 682  Q
    |||||| ||||||||| |||||||||    
T  9685258 ctagtgggtcagtcaggaagttcaca 9685233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 5532417 - 5532545
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||| ||||||| || ||  |||||||| |  ||| ||||||| | |||||||||||||| || |||||||| | |||||  ||||||||     
T  5532417 ctctatgtagaagctcaacaacctatggtgctaggaagct-aaagtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacacgttttctcatg 5532515  T
Q  490 ttttatcactttgc-tgacgcaacttttag 518  Q
    ||| | |||||||| ||||||| |||||||    
T  5532516 tttgaccactttgcttgacgcagcttttag 5532545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 20142835 - 20142755
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgt 470  Q
    |||||| || ||||||||||| || ||| ||||| ||||| ||| ||||||| | |||| ||||||||| || ||||||||    
T  20142835 ctctatgtataaggtcaacaacctttgatgctagaaaaccaaaagtgtcaaaagaaaatggtataaaagcatgttgattgt 20142755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 390 - 697
Target Start/End: Original strand, 34644563 - 34644870
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||| |||||||| |||||| |||||||  ||||| ||||||||| || | | |||| ||||||| |||||||||     
T  34644563 ctctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtaggttgtcagaacacgctttctcatg 34644662  T
Q  490 ttttatcactttg-ctgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   |||||||  ||||||||||||||| | | || |||||   ||||||||| | ||||||||  ||||||||||||||||||| ||||||||| |     
T  34644663 tttggccactttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaa-acccacaagtggtgaaaccccagtcaagtccac 34644761  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| ||||||||||||   |||| | ||| |||| |||| || |   ||||||||||||||||||||||||| |||||||||||||||||||||||      
T  34644762 acatgcatgttttcctccagcccatccatacaccataacatccgcatacctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacacgcgct 34644861  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  34644862 tccttcttc 34644870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 390 - 697
Target Start/End: Complemental strand, 29169903 - 29169597
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||| ||||| || ||  ||||||||||||||| ||||||| |||||| ||||||||| || |||||||| |||||||  |||||| |     
T  29169903 ctctatgtagaaggttaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgttttctcgtg 29169804  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||| || || ||| ||||||| || | |    |||||   ||||||| | | || ||||| ||| |  ||||||||||||| |||||||||||     
T  29169803 tttggccaccttacttgacacaactttaagggctgtctgtcctacggtaaaaggcccgacacctaatcccaa--agtggtgaaaccccagtcaagtctac 29169706  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| |||||||||||||| | || ||||| |||| |||| || | | || ||||| |||||||| ||||| | ||||||||| ||||||||| ||| |    
T  29169705 acatgcatgttttcctcctacctatccgtacaccataacatccgcaggcctgagtgttgatcttctttctagcgggtcagtcaggaagttcacaggcgcc 29169606  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  29169605 tccttcttc 29169597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 390 - 697
Target Start/End: Complemental strand, 28041237 - 28040930
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||   || ||  ||||||||||||||| ||||||| |||||| ||||||||   | |||||||| |||||||||||||||||     
T  28041237 ctctatgtagaaggtcaaccgcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtcagaacacactttctcatg 28041138  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||| | |||||   |||||||| | |   ||||   |||||||   | || ||||| ||| |||||| ||||||||| |||||||||||     
T  28041137 tttggccactttgtttgacgcggattttagagctgcctatcctacggtaaaaggtccgacacctaatccc-acaagtagtgaaaccccagtcaagtctac 28041039  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||| | ||||||||| |||| ||||  |||| |||| ||||  | | | || ||||| |||||||||||||||| || |||||| |||||||||  || |    
T  28041038 acaagcatgttttccacctacccatctgtacaccataacatctgcaggcctgagtgttgatcttctatctagtgggttagtcaggaagttcacagacgcc 28040939  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  28040938 tccttcttc 28040930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 557 - 697
Target Start/End: Complemental strand, 37932161 - 37932021
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||||  | ||||||| |  |||| |||||||||||||  ||||  ||||  ||| |||| || | | |||||||||||| ||||||    
T  37932161 cccacaagtggtgaaacctcaatcaagtccacgcatgcatgttttcctcctgtccatatgtacatcataacatccgcaggcctaagtgtcgattttctat 37932062  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    ||| || ||| ||||||||||||| | ||| ||||||||||    
T  37932061 ctaatgggtcggtcagaaagttcaaaagcgtctccttcttc 37932021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 492
Target Start/End: Original strand, 22346899 - 22346994
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattt 492  Q
    |||||||||||||| || ||   |||||||||||||| ||||||| |||||  ||||||| | || |||||||| ||||||| |||||||||||||    
T  22346899 tagaaggtcaacaacctctgctactaggaaaccgaaagtgtcaaaagcaaaaggtataaacgcatgttgattgtcagaacacgctttctcatattt 22346994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 557 - 694
Target Start/End: Original strand, 37200146 - 37200281
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||| |||||||||||   ||||||||| | ||||| ||||||||||| || ||||| |||| |||| |||||   || | |||||||| |||||||||    
T  37200146 cccacgagtggtgaaacatcagtcaagtc-acacatgcatgttttcctcttacccattggtaccccataacatttcaaact-taagtgtcaatcttctat 37200243  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttc 694  Q
    |||||| ||||| ||||||||||| | ||| |||||||    
T  37200244 ctagtgggtcagacagaaagttcataggcgtctccttc 37200281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 517
Target Start/End: Complemental strand, 4862099 - 4861971
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||||  | ||  | ||||||| ||||| ||||||| |||||| |||||||||||| ||| |||| |||| || |||||||||     
T  4862099 ctctatgtagaaggtcaacaacttttggtgttaggaaatcgaaagtgtcaaaagcaaattgtataaaagtatgttgcttgtcagaagacgctttctcatg 4862000  T
Q  490 ttttatcactttgc-tgacgcaactttta 517  Q
    ||| | || ||| | ||||||||||||||    
T  4861999 tttgaccattttacttgacgcaactttta 4861971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 518
Target Start/End: Original strand, 19035473 - 19035573
Alignment:
Q  419 gctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgc-tgacgcaactttta 517  Q
    |||||||||||| || ||||||| | |||| ||||||||| || |||||||| ||||||| ||||||||| |||   |||||||| ||||||| ||||||    
T  19035473 gctaggaaaccgtaagtgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagctttta 19035572  T
Q  518 g 518  Q
    |    
T  19035573 g 19035573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 697
Target Start/End: Original strand, 22347125 - 22347181
Alignment:
Q  641 agtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    ||||| |||||||||||||||| ||||||||||||||||||| | | ||||||||||    
T  22347125 agtgttgatcttctatctagtgggtcagtcagaaagttcacaggtgcctccttcttc 22347181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 613
Target Start/End: Complemental strand, 45659590 - 45659534
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccat 613  Q
    ||||||||||||||||||| |||||||||||  |||| |||||||||||||| ||||    
T  45659590 cccacaagtggtgaaaccccagtcaagtctacgcatgcatgttttcctcctacccat 45659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 390 - 485
Target Start/End: Complemental strand, 24177621 - 24177526
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttct 485  Q
    |||||| |||||||| ||||  || ||| ||||||||||||||| |||||||  ||||| |||||||| ||| ||||||||  | |||||||||||    
T  24177621 ctctatgtagaaggtaaacagcctctgatgctaggaaaccgaaactgtcaaaaacaaatggtataaaaatatgttgattgtcggtacacactttct 24177526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 38731606 - 38731705
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||| ||||| || ||  |||| ||| || ||| | ||||| |||||| |||||||||||| |||||||| ||||||| ||||||||||    
T  38731606 ctctatgtagaaggttaacaacctctggtgctaagaagccaaaagtttcaaaagcaaattgtataaaagtatgttgattgtcagaacacgctttctcata 38731705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 518
Target Start/End: Original strand, 2764483 - 2764605
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatc 496  Q
    |||||||||||||| || ||| |||||||| | |||| ||||||| | |||| | ||||||| || ||||||||  ||||||  |||||||| ||| | |    
T  2764483 tagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtcggaacacgttttctcatgtttgacc 2764582  T
Q  497 actttg-ctgacgcaacttttag 518  Q
    |||||| ||||| ||||||||||    
T  2764583 actttgtctgacacaacttttag 2764605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 504
Target Start/End: Complemental strand, 20259907 - 20259793
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  |||| |||||||||| ||||||    |||| ||||||||  || |||||||| ||||||| |||||||||     
T  20259907 ctctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtcagaacacgctttctcatt 20259808  T
Q  490 ttttatcactttgct 504  Q
    ||| | |||||||||    
T  20259807 tttaaccactttgct 20259793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 488
Target Start/End: Original strand, 21473000 - 21473098
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||| |||||||||||||  || ||  |||||||||| | || ||||||| |||||| ||||||||  || |||||||| ||||||| |||||||||    
T  21473000 ctctatgtagaaggtcaacagcctctggtgctaggaaactgcaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttctcat 21473098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 7433265 - 7433334
Alignment:
Q  435 tgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgct 504  Q
    |||||||||||||| |||||||| ||  |||||| |  ||||||| |||||||||||| |||||||||||    
T  7433265 tgtcaaatgcaaatggtataaaaatacgttgattttatgaacacattttctcatatttgatcactttgct 7433334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 2898699 - 2898786
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacac 478  Q
    |||||| |||||||||||||| || ||  ||||||||||||||| | ||||| |||||| ||||||||   |||||||||| |||||||    
T  2898699 ctctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtatcaaaagcaaatggtataaaa-actattgattgtcagaacac 2898786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 518
Target Start/End: Complemental strand, 50161466 - 50161398
Alignment:
Q  451 tataaaagtatattgattgtgagaacacactttctcatattttatcactttgc-tgacgcaacttttag 518  Q
    |||||||| || |||||||||||||||| ||||||||| |||   |||||||| |||||||||||||||    
T  50161466 tataaaagcatgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaacttttag 50161398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 658
Target Start/End: Complemental strand, 22375538 - 22375479
Alignment:
Q  599 tttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatct 658  Q
    |||||||||| | |||||||| |||| ||||||| | | |||||||||||||||||||||    
T  22375538 tttcctcctaccaattcgtacaccataacattcgcaggcctaagtgtcgatcttctatct 22375479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 680
Target Start/End: Original strand, 38731750 - 38731867
Alignment:
Q  563 agtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtg 662  Q
    |||||||||||||||||||| || | |  || || ||||||||||| |||| || || |||| | ||  | |||| ||| | ||||||||||||||||||    
T  38731750 agtggtgaaaccctagtcaaatccacatttgcatattttcctcctacccatccgcacaccataatatctgcaagtttaactatcgatcttctatctagtg 38731849  T
Q  663 tgtcagtcagaaagttca 680  Q
     |||||| || |||||||    
T  38731850 ggtcagtaaggaagttca 38731867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 560 - 656
Target Start/End: Complemental strand, 4861929 - 4861833
Alignment:
Q  560 acaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    |||||||||||||| | |||||| || | ||||| ||||||| |||||| |||| ||||| |||| ||||  ||| |   |||||||||||||||||    
T  4861929 acaagtggtgaaacaccagtcaaatccacacatgcatgtttttctcctacccatccgtacaccataacatctgtaggctgaagtgtcgatcttctat 4861833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 425 - 501
Target Start/End: Original strand, 36486918 - 36486994
Alignment:
Q  425 aaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcacttt 501  Q
    ||||| ||| ||||||| ||||||  |||||||  ||||||||||| | ||||| ||||||||||||| | ||||||    
T  36486918 aaaccaaaagtgtcaaaagcaaattatataaaaagatattgattgtcaaaacacgctttctcatatttgaccacttt 36486994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 397 - 697
Target Start/End: Complemental strand, 50001029 - 50000728
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtat-aaaagtatattgattgtgagaacacactttctcatattttat 495  Q
    ||||||||||||   || ||| ||||| || || ||| ||||||| |||||| |||| ||||| || |||||||| ||||||| ||||||||| ||| |     
T  50001029 tagaaggtcaactgcctctgatgctagaaagccaaaagtgtcaaaagcaaattgtattaaaagcatgttgattgtcagaacacgctttctcatgtttgac 50000930  T
Q  496 cactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgt 594  Q
    ||||||||| |||||| ||||||||| |    |||||   ||||||||| | |||||| | ||| |||||||||||||||| ||||||||| | |||||     
T  50000929 cactttgcttgacgcagcttttagagctgtctgtcctaccgtaaaagcccccaccccttaaccc-acaagtggtgaaaccccagtcaagtccacacatgc 50000831  T
Q  595 atgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttc 694  Q
    |||||||||||| | |||| ||||| |||| |||| || | | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  50000830 atgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacaggcgcctccttc 50000731  T
Q  695 ttc 697  Q
    |||    
T  50000730 ttc 50000728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 390 - 694
Target Start/End: Original strand, 31847084 - 31847388
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||    | ||| |||||||| || ||| ||||||| |||||| ||| ||||  || |||| ||| ||||||   ||||||||     
T  31847084 ctctatgtagaaggtcaaccgcttctgatgctaggaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtcagaacatggtttctcatg 31847183  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    ||| | ||||||||| |||||| ||||||| | | |  |||||  |||||||||| | |||||||| ||| |||||||||||||||||||||||||| |     
T  31847184 tttgaccactttgcttgacgcagcttttagggctgcctgtcctactgtaaaagcccccacccctaaaccc-acaagtggtgaaaccctagtcaagtccac 31847282  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| |||||||||||| | ||||  |||| |||| | ||  | | | ||||||||| ||||| ||||||||| ||||||||||||||||||| ||| |    
T  31847283 acatgcatgttttcctccaatccatctgtacaccataatatctgcaggcctaagtgtcaatcttttatctagtgggtcagtcagaaagttcacaggcgcc 31847382  T
Q  689 tccttc 694  Q
    ||||||    
T  31847383 tccttc 31847388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 419 - 697
Target Start/End: Complemental strand, 30940819 - 30940542
Alignment:
Q  419 gctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgct-gacgcaactttta 517  Q
    ||||||||| ||||| ||||||| |||| | ||||||||| || |||||||| ||||||| ||||||||| ||| | |||||| || |||||||||||||    
T  30940819 gctaggaaatcgaaagtgtcaaaagcaa-tggtataaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaactttta 30940721  T
Q  518 gagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgt 617  Q
    | | |    ||||| | |||||||     || | ||| ||| |||||||| ||||||  ||||||||||| ||| | ||||||||| |||| ||||||||    
T  30940720 gggttgtctgtcctatggtaaaaggtttgacacttaatccc-acaagtggcgaaacctcagtcaagtctacacaagcatgttttccacctacccattcgt 30940622  T
Q  618 acgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    || |||| ||||||||| | || ||||| |||||||||||||||| ||||||||| ||||||||| | | ||||||||||    
T  30940621 acaccataacattcgtaggccttagtgttgatcttctatctagtgggtcagtcaggaagttcacaggtgcctccttcttc 30940542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 390 - 682
Target Start/End: Complemental strand, 12918482 - 12918190
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||||||| ||| ||||||||  ||||| ||||||| | ||||||||||||||| | |||||||| |||||||  ||||| ||     
T  12918482 ctctatctagaaggtcaacaatctctgatgctaggaagtcgaaagtgtcaaaagtaaatagtataaaagtgtgttgattgtcagaacacgatttcttatg 12918383  T
Q  490 ttttatcactttg-ctgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    ||| | |||||||  ||||||||||||||| | |  | |||||   ||||||||| | |  | |||  |||||||||| |||||| | |||||| |  |     
T  12918382 tttgaccactttgtttgacgcaacttttagggttgtttgtcctaccgtaaaagccccgaatcttaa-tcccacaagtgatgaaactccagtcaactacac 12918284  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
    ||||| ||||||||||| || |||| | ||| |||| |||| |  | | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  12918283 acatgcatgttttcctcttacccatccatacaccatgacatccacaggcctaagtgtcgatcttctatctagtgggtcagttagaaagttcaca 12918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 535 - 697
Target Start/End: Original strand, 3330093 - 3330254
Alignment:
Q  535 gtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgta 634  Q
    ||||||||| | |||||||| ||| |||||||||||||||| ||||||||| | ||||| | |||||||||| | |||| ||||| |||| ||||  | |    
T  3330093 gtaaaagcccccacccctaaaccc-acaagtggtgaaaccccagtcaagtccacacatgcacgttttcctccaatccatccgtacaccataacatctgca 3330191  T
Q  635 agtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
     | |||||||| |||||||||||||||| ||||||||||||||||||| | | ||||||||||    
T  3330192 tgcctaagtgttgatcttctatctagtgggtcagtcagaaagttcacaggtgcctccttcttc 3330254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 567 - 697
Target Start/End: Original strand, 25706683 - 25706813
Alignment:
Q  567 gtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtc 666  Q
    ||||||||| | ||||||| | ||||| ||||||| |||||| ||||  |||| |||| |||| |||| |  |||||||||||||||||||||||| |||    
T  25706683 gtgaaacccaaatcaagtccacacatgcatgtttttctcctacccatctgtacaccataacatacgtaggcttaagtgtcgatcttctatctagtgggtc 25706782  T
Q  667 agtcagaaagttcacacgcgactccttcttc 697  Q
    |||||||||||||||| ||| ||||||||||    
T  25706783 agtcagaaagttcacatgcgcctccttcttc 25706813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 557 - 697
Target Start/End: Original strand, 26521652 - 26521792
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    |||||||||| |||||| | ||||||||| | ||||| |||||||||||||| || |  |||| |||| || |||||| |  ||| ||||||||||||||    
T  26521652 cccacaagtgatgaaactccagtcaagtccatacatgcatgttttcctcctacccgtctgtacaccataaccttcgtaggcttaaatgtcgatcttctat 26521751  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    |||||| ||||||||||||| ||||| ||| ||| ||||||    
T  26521752 ctagtgggtcagtcagaaagctcacatgcgcctcattcttc 26521792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 390 - 606
Target Start/End: Original strand, 53619583 - 53619799
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||   || ||| ||||||||  | ||| |||||||  ||||| ||||||||| || |||||||| |||||||  ||||||||     
T  53619583 ctctatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacacgttttctcatg 53619682  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||||| |||||| ||||||| | | |  |||||  |||||||||| | ||| |||| ||| |||||||||||||||| ||||||||| |     
T  53619683 tttggccactttgcttgacgcagcttttagggttgcctgtcctactgtaaaagcccccacctctaaaccc-acaagtggtgaaaccccagtcaagtccac 53619781  T
Q  589 acatgtatgttttcctcc 606  Q
    ||||| ||||||||||||    
T  53619782 acatgcatgttttcctcc 53619799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 55933570 - 55933443
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| |  ||| ||||||||  ||||| ||||||| |||||| ||||||||| || |||||||| |||||| ||||||||||     
T  55933570 ctctatgtagaaggtcaacaacc--tgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaaactttctcatg 55933473  T
Q  490 ttttatcactttg-ctgacgcaacttttag 518  Q
    |||   |||||||  |||||||||||||||    
T  55933472 tttggccactttgtttgacgcaacttttag 55933443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 662
Target Start/End: Original strand, 25504457 - 25504562
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||| |||||| |||| ||||| |||| |||| || | |||| |||||  | |||||||    
T  25504457 cccacaagtggtgaaacctcagtcaagtctatacatgcatgtttttctcctacccatccgtacaccataacatccgcatgtctgagtgttaaacttctat 25504556  T
Q  657 ctagtg 662  Q
    ||||||    
T  25504557 ctagtg 25504562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 504
Target Start/End: Complemental strand, 600802 - 600688
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  | ||||||||||||| || |||| |||||| ||||||||| || || ||||| |||||||  ||||||||     
T  600802 ctctatgtagaaggtcaacaacctctggtgttaggaaaccgaaagtgacaaaagcaaatggtataaaagcatgttaattgttagaacacgttttctcatg 600703  T
Q  490 ttttatcactttgct 504  Q
    |||  ||||||||||    
T  600702 tttggtcactttgct 600688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 662
Target Start/End: Complemental strand, 56462047 - 56461945
Alignment:
Q  560 acaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatcta 659  Q
    |||| ||||||||||  ||||||||| | ||||| ||||||||| ||||  ||| ||||| |||| ||||||| | |  |||||||||||||||||||||    
T  56462047 acaaatggtgaaacctcagtcaagtccacacatgcatgttttccacctactcatccgtacaccataacattcgcatgcttaagtgtcgatcttctatcta 56461948  T
Q  660 gtg 662  Q
    |||    
T  56461947 gtg 56461945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 390 - 485
Target Start/End: Complemental strand, 50483306 - 50483211
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttct 485  Q
    |||||| |||||||||||||| || ||  ||||||||||||||| |||| || |||||| ||||||||  || |||||||| |||| || ||||||    
T  50483306 ctctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtcagaagacgctttct 50483211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 518
Target Start/End: Original strand, 132389 - 132511
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatc 496  Q
    ||||| ||||||||||| |||   ||||||||||||| ||| |||  ||||| ||||||||| || |||||||| |||||||  |||||||| ||||  |    
T  132389 tagaatgtcaacaatctctgatattaggaaaccgaaagtgtaaaaaacaaatggtataaaagcatgttgattgtcagaacacgatttctcatgttttgcc 132488  T
Q  497 actttgc-tgacgcaacttttag 518  Q
    | ||||| ||||||| |||||||    
T  132489 attttgcttgacgcagcttttag 132511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 470
Target Start/End: Original strand, 3329993 - 3330073
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgt 470  Q
    |||||| ||||||||||||   || ||| |||||||| || ||| ||||||| |||||||||||||||| || ||||||||    
T  3329993 ctctatgtagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatagtataaaagcatgttgattgt 3330073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 662
Target Start/End: Original strand, 18534585 - 18534669
Alignment:
Q  578 gtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtg 662  Q
    |||||||| | ||||| |||||||||| ||| |||| ||||  |||| ||||| ||| | |||||||||||||||| ||||||||    
T  18534585 gtcaagtccacacatgcatgttttccttctacccatccgtataccataacatttgtaggcctaagtgtcgatcttcaatctagtg 18534669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 488
Target Start/End: Original strand, 25504292 - 25504390
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    ||||||||| |||||||||| ||| |   ||||||||||| ||||||||||| |||||  ||||||||  || | |||||| |||||||  ||||||||    
T  25504292 ctctatttaaaaggtcaacagtctctagtgctaggaaaccaaaaatgtcaaaagcaaacggtataaaaacatgtcgattgttagaacacgttttctcat 25504390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 56462216 - 56462118
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||| |||||||||||||| || ||  ||||||||||| ||| |||| ||  ||||| ||||||||  || |||||||| ||||||| |||| ||||    
T  56462216 ctctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaacatgttgattgtcagaacacgctttatcat 56462118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 7536681 - 7536601
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgt 470  Q
    |||||| |||||||||||||| || ||  |||||||||| |||| |||||||  ||||| ||||||||  || ||||||||    
T  7536681 ctctatgtagaaggtcaacaacctctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgt 7536601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 557 - 613
Target Start/End: Original strand, 53170671 - 53170727
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccat 613  Q
    ||||| ||||||||||||| ||||||||||| ||| | ||||||||| |||| ||||    
T  53170671 cccacgagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccat 53170727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 638 - 682
Target Start/End: Original strand, 53170746 - 53170790
Alignment:
Q  638 ctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
    |||||||| |||||||||||||||  ||||||||| |||||||||    
T  53170746 ctaagtgttgatcttctatctagtaggtcagtcaggaagttcaca 53170790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 435 - 697
Target Start/End: Original strand, 39434709 - 39434971
Alignment:
Q  435 tgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgct-gacgcaacttttagagatactcgtccttt 533  Q
    |||||||  ||||| ||||||||| || |||||||| ||||||| ||||||||| |||   ||||||||| |||||||||||||||| | |  |||||      
T  39434709 tgtcaaaaacaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctac 39434808  T
Q  534 tgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgt 633  Q
    |||||||||| | |||||||| ||| |||||||||||||||| ||||||||  | ||||| |||||||||||| | |||| ||||| |||| ||| |||     
T  39434809 tgtaaaagcctccacccctaaaccc-acaagtggtgaaaccccagtcaagtacacacatgcatgttttcctccaacccatccgtacaccataaca-tcga 39434906  T
Q  634 aag-tctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
     ||  ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  39434907 cagacctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacaggcgcctccttcttc 39434971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 402 - 697
Target Start/End: Complemental strand, 25021912 - 25021617
Alignment:
Q  402 ggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcacttt 501  Q
    ||||||||| || ||  |||||||| || ||||||||||| | |||| ||||||||  || |||||||||||||||||||||||||||||| | ||||||    
T  25021912 ggtcaacaacctctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacacactttctcatatttcaccacttt 25021813  T
Q  502 gc-tgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttt 600  Q
    || |||| |||||||||| | |    ||| |  ||||||| |  | ||||||||  ||||||||||||||||| |  |||||||| | ||||| ||||||    
T  25021812 gcttgacacaacttttagggctgtatgtcatactgtaaaaacatcgacccctaa-tcccacaagtggtgaaactccggtcaagtccacacatgcatgttt 25021714  T
Q  601 tcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    |||||||| |||| ||||| |||| ||||  | | | ||||||| ||||||||||||||||| ||||| ||  ||||||||| |||  |||||||||    
T  25021713 tcctcctacccatccgtacaccataacatctgcaggcctaagtgacgatcttctatctagtgggtcagacaagaagttcacatgcgcttccttcttc 25021617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 697
Target Start/End: Complemental strand, 35740096 - 35739790
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||||||| ||  |||||||||| |||| ||||||| || ||| ||||||||  || |||||||| ||||| | |||||||||     
T  35740096 ctctatgtagaaggtcaacaatctctggtgctaggaaactgaaagtgtcaaaagctaattgtataaaaacatgttgattgtcagaacccgctttctcatg 35739997  T
Q  490 ttttatcactttgctga-cgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||||| | | |||||||||| |||    |||||   ||||||| | | |||  | |  ||||| ||||||||||||| ||||||||| |     
T  35739996 tttggccactttgcttaacacaacttttagggatgtctgtcctaccgtaaaaggcccgacc--ttaatcccactagtggtgaaaccccagtcaagtccac 35739899  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| |||||||||||||| |||||| ||| |||| ||||  | | | |||||||| ||||||||| | | || ||||||||||||||||||| ||  |    
T  35739898 acatgcatgttttcctcctacccattcatacaccataacatctgcatgcctaagtgttgatcttctaccaaatgggtcagtcagaaagttcacaggcacc 35739799  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  35739798 tccttcttc 35739790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 420 - 682
Target Start/End: Original strand, 500254 - 500516
Alignment:
Q  420 ctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgc-tgacgcaacttttag 518  Q
    |||||||||||||||||||||| | |||| ||||||||| || |||||||| |||||||  |||||||| |||   |||||||| |||||||||||||||    
T  500254 ctaggaaaccgaaaatgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttag 500353  T
Q  519 agatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgta 618  Q
     | |    |||||   ||||||| | | || |||||  ||||||||||||||||||  | ||||||||| ||||| |||||||||| ||| |||| | ||    
T  500354 ggctgtcggtcctaccgtaaaaggcccgacacctaa-tcccacaagtggtgaaacctcactcaagtctacacatgcatgttttccttctacccatccata 500452  T
Q  619 cgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
    |  ||| |||| || | | || ||||| |||||||||||||||| || | |||| |||||||||    
T  500453 caacataacatccgcaggcctgagtgttgatcttctatctagtgggtaaatcaggaagttcaca 500516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 517
Target Start/End: Original strand, 6592580 - 6592700
Alignment:
Q  398 agaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatca 497  Q
    ||||||||||||| || || ||||||||||| |||| ||||||| |||||| || |||||  || |||||||||||||||| ||||||||| |||   ||    
T  6592580 agaaggtcaacaacctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttggcca 6592679  T
Q  498 ctttgc-tgacgcaactttta 517  Q
    |||||| ||||||| ||||||    
T  6592680 ctttgcttgacgcagctttta 6592700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 6618291 - 6618379
Alignment:
Q  400 aaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||||||||||| || ||||||||||| |||| ||||||| |||||| || |||||  || |||||||||||||||| |||||||||    
T  6618291 aaggtcaacaatctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcat 6618379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 397 - 678
Target Start/End: Original strand, 24125032 - 24125313
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatc 496  Q
    ||||||| |||||| || ||  ||||||||| | ||| ||||||| |||||| ||||||||| || |||||||| ||| ||| ||||||||| |||   |    
T  24125032 tagaaggccaacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcagagcacgctttctcatgtttggcc 24125131  T
Q  497 actttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgta 595  Q
    | |||||| || ||| ||||||| | | || ||||    ||||||| | | || | ||| ||| |||||||||||||||| ||||||||||| ||||| |    
T  24125132 attttgcttgatgcagcttttagggctgcttgtcccaccgtaaaaggcacgacgcataatccc-acaagtggtgaaaccccagtcaagtctacacatgca 24125230  T
Q  596 tgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagtt 678  Q
    ||||||| ||||| || |  |||  |||| ||||  | | | || ||||| |||||||||||||||| ||||||||| |||||    
T  24125231 tgttttcttcctacccgtcagtagaccataacatatgcaggcctgagtgttgatcttctatctagtgggtcagtcaggaagtt 24125313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 488
Target Start/End: Original strand, 38815291 - 38815389
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||| |||||||||||||  || ||  |||||||| | |||| ||||||| |||||| ||||||||| || |||||||| ||||||| |||||||||    
T  38815291 ctctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcat 38815389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 8115843 - 8115895
Alignment:
Q  425 aaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaaca 477  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||| | ||||||    
T  8115843 aaaccaaaagtgtcaaatgcaaatggtataaaagtatattgattattagaaca 8115895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 470
Target Start/End: Original strand, 37514218 - 37514298
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgt 470  Q
    |||||| |||||||||||||  || ||  |||||||||  |||| ||||||| |||||||||||||| | || ||||||||    
T  37514218 ctctatgtagaaggtcaacagcctctggcgctaggaaattgaaagtgtcaaaagcaaatagtataaacgcatgttgattgt 37514298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 390 - 697
Target Start/End: Original strand, 34304493 - 34304800
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||   | ||| |||||||| || ||| ||||||| |||||| ||||||||| || |||||||| ||||||| |||||||||     
T  34304493 ctctatgtagaaggtcaacatcatctgatgctaggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatg 34304592  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||  | | |||||| |||||| ||||||| | ||   ||||    ||||||||| | || ||||| ||| |||||||||||||||| | ||||||| |     
T  34304593 tttggttattttgcttgacgcagcttttagggctagctgtccaaccgtaaaagccccgactcctaaaccc-acaagtggtgaaaccccaatcaagtccac 34304691  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| ||||||||||||   |||| ||||| |||| |||| || | | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  34304692 acatgcatgttttcctccagcccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacatgcgtc 34304791  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  34304792 tccttcttc 34304800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 557 - 697
Target Start/End: Complemental strand, 357660 - 357520
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||| | ||||||||| | ||||| ||||||| |||| | |||| | ||| |||| ||||  | |   |||||||||||||||||||    
T  357660 cccacaagtggtgaaactccagtcaagtccacacatgcatgttttgctccaacccatccatacaccataacatctgcatacctaagtgtcgatcttctat 357561  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    ||||||||||||||| |||||||||| | | ||||||||||    
T  357560 ctagtgtgtcagtcaaaaagttcacaagggcctccttcttc 357520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 390 - 681
Target Start/End: Complemental strand, 4206706 - 4206415
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  |||||||| |||||| ||||||| ||||||  |||||||| || || ||||| ||||||| |||||||||     
T  4206706 ctctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacacgctttctcatg 4206607  T
Q  490 ttttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||||||||| ||||| |||||||  | | |  |||||   |||||||     |  ||||| ||| |||||||||||||||| |||||||||||     
T  4206606 tttagccactttgcttgacgccacttttaaggctgcatgtcctaccgtaaaaggtctgatgcctaatccc-acaagtggtgaaaccccagtcaagtctac 4206508  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcac 681  Q
    ||||| |||||||||||| | ||||| |||| |||| |||| || | |  | ||||| |||||| ||||||||| |||| |||  ||||||||    
T  4206507 acatgcatgttttcctccaacccatttgtacaccataacatccgcaggcttgagtgttgatcttttatctagtgggtcaatcaagaagttcac 4206415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 557 - 697
Target Start/End: Original strand, 12401495 - 12401635
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    |||| |||||||||||||| | ||||||||| ||||| |||||||||||||| |||| ||||| |||| ||||| | |    ||||| | ||||| ||||    
T  12401495 cccataagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatttgcagacttaagtcttgatctgctat 12401594  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    |||||  ||||||||| ||||||||| ||| ||||||||||    
T  12401595 ctagtaggtcagtcaggaagttcacaggcgcctccttcttc 12401635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 397 - 606
Target Start/End: Complemental strand, 33220814 - 33220605
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatc 496  Q
    |||||||||||||| ||  || |||||||| |||||| ||||||| |||||| ||||||||| || |||||||| |  |||| ||||||||| |||   |    
T  33220814 tagaaggtcaacaacctcggatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaacacacgctttctcatgtttggcc 33220715  T
Q  497 actttgc-tgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgta 595  Q
    ||||||| ||| ||| ||||||||| |    |||||   ||||||||| | ||||||||  ||||||||||||||||||| |||||| |  | ||||| |    
T  33220714 actttgcttgatgcagcttttagagctgtctgtcctaccgtaaaagccccgacccctaa-acccacaagtggtgaaaccccagtcaaattcacacatgca 33220616  T
Q  596 tgttttcctcc 606  Q
    |||||||||||    
T  33220615 tgttttcctcc 33220605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 17249415 - 17249286
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||   || ||| |||||||| || ||| ||||||| |||||| ||||||||| || |||||||| |||||||||||||||||     
T  17249415 ctctatgtagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatg 17249316  T
Q  490 ttttatcactttg-ctgacgcaacttttag 518  Q
    |||   |||||||  |||||||||||||||    
T  17249315 tttggccactttgtttgacgcaacttttag 17249286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 697
Target Start/End: Original strand, 32115853 - 32115993
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    |||| ||||| ||||||||  |||||||||| ||||| ||||||||||||||  |||  |||| |||| |||| || | | || ||||| ||||||||||    
T  32115853 cccataagtgatgaaaccccggtcaagtctacacatgcatgttttcctcctactcatctgtacaccataacatccgcaggcctgagtgttgatcttctat 32115952  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    |||||  ||||||||| ||||||||| ||| ||| ||||||    
T  32115953 ctagtaggtcagtcaggaagttcacatgcgcctctttcttc 32115993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 4166032 - 4165934
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||| |||||||||||||| || ||  |||||||| |||||| ||||||| ||||||  |||||||| || |||||||| ||||||| |||||||||    
T  4166032 ctctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtcagaacacgctttctcat 4165934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 680
Target Start/End: Complemental strand, 45787 - 45489
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||  || ||  |||| |||||||||| |||||||  ||||| | ||||||| || |||||||| |||||||  ||||||||     
T  45787 ctctatgtagaaggtcaacagcctctggtgctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgttgattgtcagaacacgttttctcatg 45688  T
Q  490 ttttatcactttgc-tgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaac-cct-------agtc 580  Q
    ||| |||||||||| ||| ||| ||||||||| | |  |||||   |||||||   | || |||||  ||||||||||||||||| |||        |||    
T  45687 tttgatcactttgcttgatgcagcttttagagctgcctgtcctacggtaaaaggtccgacacctaa-tcccacaagtggtgaaacacctgtcaagctgtc 45589  T
Q  581 aagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttca 680  Q
    ||||||| ||| | |||||||||  ||| |||| ||||| |||| ||||  | | | || ||||| |||||||||||||||| |||||||||||||||||    
T  45588 aagtctacacaagcatgttttccatctacccatccgtacaccatcacatctgcaggcctgagtgttgatcttctatctagtgggtcagtcagaaagttca 45489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 488
Target Start/End: Original strand, 959584 - 959675
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  ||||| |||||||   || |||||||| |||||||  ||||||||    
T  959584 tagaaggtcaacaacctctggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgttgattgtcagaacacgttttctcat 959675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 488
Target Start/End: Original strand, 34415464 - 34415531
Alignment:
Q  421 taggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    ||||||||| ||| |||||||  ||||| | ||||||| || |||||||| |||||||||||||||||    
T  34415464 taggaaacctaaagtgtcaaaaacaaatggcataaaagcatgttgattgtcagaacacactttctcat 34415531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 557 - 613
Target Start/End: Original strand, 28543539 - 28543595
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccat 613  Q
    ||||||||||||||||||  |||||| || | ||||| |||||||||||||| ||||    
T  28543539 cccacaagtggtgaaacctcagtcaaatccacacatgcatgttttcctcctatccat 28543595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 398 - 697
Target Start/End: Complemental strand, 39583331 - 39583032
Alignment:
Q  398 agaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatca 497  Q
    ||||||||||||| || ||| ||||||||||||||| |||| ||  |||||  |||||||| || |||||||| ||||||| ||||||||| |||   ||    
T  39583331 agaaggtcaacaacctatgatgctaggaaaccgaaagtgtcgaaaacaaatgatataaaagcatgttgattgtcagaacacgctttctcatgtttggcca 39583232  T
Q  498 ctttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtat 596  Q
    ||||||| |||||| ||||||| | | |   ||||    |||| | | | |||| ||| ||| ||||||||| |||||  ||||||||| |  |||| ||    
T  39583231 ctttgcttgacgcagcttttagggctgcctatcctaccataaatggcccgacccttaatccc-acaagtggtaaaacctaagtcaagtccacgcatgcat 39583133  T
Q  597 gttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttctt 696  Q
    |||||||||||| |||| ||||| | || |||| || | | ||||||||||||||||||||||||| |||| ||||||||||||||  || |||||||||    
T  39583132 gttttcctcctacccatccgtacactataacatccgcatgcctaagtgtcgatcttctatctagtgggtcaatcagaaagttcacatacgcctccttctt 39583033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 390 - 697
Target Start/End: Original strand, 7900855 - 7901156
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||| |||||||| |||||| |||||||  ||||| ||||||||| || |||||||| |||| || |||||||||     
T  7900855 ctctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaaaacgctttctcatg 7900954  T
Q  490 ttttatcactttgc-tgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    ||     | ||||| |||||||  |||||| ||||  ||||||   ||||||| | | ||||||||  ||||||||||||||||||| ||||||||| |     
T  7900955 ttcggctattttgcttgacgcagtttttagggatatccgtcctaccgtaaaagacccaacccctaa-tcccacaagtggtgaaaccccagtcaagtccac 7901053  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| ||||||||||||||  |||   ||| |||| ||||   || |     |||| |||||||||||||||| ||||||||||||||||||| ||| |    
T  7901054 acatgcatgttttcctcctacacatctatacaccataacat--atacg----ggtgttgatcttctatctagtgagtcagtcagaaagttcacaggcgtc 7901147  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  7901148 tccttcttc 7901156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 390 - 697
Target Start/End: Complemental strand, 52741622 - 52741314
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  ||||||||||| ||| ||||||| |||||| ||||||||| || |||||||| ||||||| |||||||||     
T  52741622 ctctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatg 52741523  T
Q  490 ttttatcactttgct-gacgcaactttt-agagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtcta 587  Q
    |||  ||| |||| | ||| || ||||| || | | |  |||||    ||||||   ||||  |||| ||| |||||||||||||||  |||||||||||    
T  52741522 tttggtcaatttgtttgactcagctttttagggctgcctgtcctacaataaaaggtcctacatctaatccc-acaagtggtgaaacctcagtcaagtcta 52741424  T
Q  588 gacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcga 687  Q
     ||| | ||||||||| |||| |||| ||||  |||  ||||  | |||||| ||||| |||||||||||||||| ||||||||| |||||||||  ||     
T  52741423 cacaagcatgttttccacctacccatccgtataccacaacatctgcaagtctgagtgttgatcttctatctagtgggtcagtcaggaagttcacatacgc 52741324  T
Q  688 ctccttcttc 697  Q
    ||||||||||    
T  52741323 ctccttcttc 52741314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 390 - 697
Target Start/End: Original strand, 53785706 - 53786013
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  ||||||||||||||| ||||||| |||||| ||||||||| || |||||||| ||||||| ||||||| |     
T  53785706 ctctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcgtg 53785805  T
Q  490 ttttatcactttgc-tgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   ||| || | ||||||  |||| || | | |   ||||   ||||||| | | || |||||  ||||| ||||||||||||| |||||||||||     
T  53785806 tttggccaccttacttgacgcggctttaagggctgcctatcctacggtaaaaggcccgacacctaa-tcccactagtggtgaaaccccagtcaagtctac 53785904  T
Q  589 acatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgac 688  Q
    ||||| |||||||||||||| |||| ||||| |||  |||| || | | || ||||| |||||| | ||||| | |||||| || ||||||||| |||      
T  53785905 acatgcatgttttcctcctacccatccgtacaccaaaacatccgcatgcctgagtgttgatcttatttctagcgggtcagttaggaagttcacatgcgct 53786004  T
Q  689 tccttcttc 697  Q
    |||||||||    
T  53786005 tccttcttc 53786013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 424 - 697
Target Start/End: Original strand, 44198798 - 44199071
Alignment:
Q  424 gaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgct-gacgcaacttttagagat 522  Q
    |||||||||| ||||||| |||||| ||||||||| || |||||| | ||||||| ||||||||| |||   ||||||||| |||||||||||||||| |    
T  44198798 gaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagct 44198897  T
Q  523 actcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgcc 622  Q
     |  | |||   |||||||   | || |||||  ||||||||||||||||||| ||||||||||| ||    ||||||||| ||||  ||| | ||| ||    
T  44198898 gcctgacctacggtaaaaggtccgacacctaa-tcccacaagtggtgaaaccccagtcaagtctacactaacatgttttccacctactcatccatacacc 44198996  T
Q  623 attacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    || |  | |  ||| || ||||| |||||||||||||||| ||||||||  ||||||||| ||  ||||||||||    
T  44198997 ataatgtccacaagcctgagtgttgatcttctatctagtgggtcagtcacgaagttcacaggcacctccttcttc 44199071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 419 - 681
Target Start/End: Original strand, 49017989 - 49018251
Alignment:
Q  419 gctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgctg-acgcaactttta 517  Q
    ||||||||||||||| ||| |||   |||| ||||||||  || |||||||| ||||||||||||||||| |||  |||||||| |  ||| |||||| |    
T  49017989 gctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacatgttgattgttagaacacactttctcatgtttggtcactttgttttacgtaactttca 49018088  T
Q  518 gagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgt 617  Q
    | | | || |||||   ||||||| | | || |||||  || |||||||||||||| | |||||||| || ||||| ||||||||||| || | || |||    
T  49018089 gggttgcttgtcctaccgtaaaaggctcgacacctaattcc-acaagtggtgaaactccagtcaagtttacacatgcatgttttcctcgtaccaatccgt 49018187  T
Q  618 acgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcac 681  Q
    || |||| ||||  | | | || |||||  ||||||||||||||| ||||||||| ||||||||    
T  49018188 acaccataacatctgcatgcctgagtgttaatcttctatctagtgggtcagtcaggaagttcac 49018251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 488
Target Start/End: Original strand, 32546792 - 32546890
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||| |||||||||||||  || ||  |||||||||| |||| ||||||| |||||| |||||||||||| ||||||||  |||||| |||||||||    
T  32546792 ctctatgtagaaggtcaacagcctttggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagtatgttgattgtccgaacacgctttctcat 32546890  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 662
Target Start/End: Original strand, 29861964 - 29862066
Alignment:
Q  560 acaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatcta 659  Q
    ||||||| | |||||| ||||||||  | ||||| |||||||||||||| |||| ||||| |||| ||||  | | | ||||||||||||||||||||||    
T  29861964 acaagtgtttaaaccccagtcaagttcacacatgcatgttttcctcctacccatccgtacaccataacatctgcatgcctaagtgtcgatcttctatcta 29862063  T
Q  660 gtg 662  Q
    |||    
T  29862064 gtg 29862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 504
Target Start/End: Complemental strand, 37133109 - 37132995
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  |||| |||||||||| ||| |||  ||||| ||||||||  || |||||||| ||||||| |||||||||     
T  37133109 ctctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtaaaaaacaaatggtataaaaacatgttgattgtcagaacacgctttctcatg 37133010  T
Q  490 ttttatcactttgct 504  Q
    ||| | |||||||||    
T  37133009 tttaaccactttgct 37132995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 419 - 517
Target Start/End: Original strand, 4473087 - 4473186
Alignment:
Q  419 gctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttatcactttgc-tgacgcaactttta 517  Q
    |||||||| |||||| |||||||  ||||||||||||||  |||||||| || ||||||| |||| |||| ||||  |||||||| |||||||| |||||    
T  4473087 gctaggaagccgaaagtgtcaaaaacaaatagtataaaaacatattgatggttagaacacgctttttcatgttttgacactttgcttgacgcaattttta 4473186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 678
Target Start/End: Original strand, 13582579 - 13582796
Alignment:
Q  463 ttgattgtgagaacacactttctcatattttatcactttgct-gacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccac 561  Q
    |||||||| |||||||||||||| || ||| ||||||||| | |||||| ||||||| | | || |||||   ||||||| |   || ||||| ||| ||    
T  13582579 ttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacggtaaaaggcctgacacctaatccc-ac 13582677  T
Q  562 aagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccat-ta-cattcgtaagtctaagtgtcgatcttctatcta 659  Q
    ||||| |||||||   |||||||||| ||||| |||||||||||||| |||| | ||| |||| || ||| |||||| |  ||||| |||||||||||||    
T  13582678 aagtgttgaaacctcggtcaagtctacacatgcatgttttcctcctacccatccatacaccatatagcatccgtaagccagagtgttgatcttctatcta 13582777  T
Q  660 gtgtgtcagtcagaaagtt 678  Q
     ||  |||||||| |||||    
T  13582778 atggatcagtcaggaagtt 13582796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 3443422 - 3443293
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || |   |||||||||| |||| ||||||  | |||| ||||||||| || |||||||| |||| ||||||| ||||     
T  3443422 ctctatgtagaaggtcaacaacctctagtgctaggaaactgaaagtgtcaacagaaaatggtataaaagcatgttgattgttagaatacactttttcatg 3443323  T
Q  490 ttttatcactttgc-tgacgcaacttttag 518  Q
    |||   || ||||| |||||||||||||||    
T  3443322 tttggccattttgcttgacgcaacttttag 3443293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 26772755 - 26772884
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||   || ||| |||||||| || ||| ||||||| |||||| ||||||||| || |||||||| |||||||  ||||| ||     
T  26772755 ctctatatagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgttttctgatg 26772854  T
Q  490 ttttatcactttgc-tgacgcaacttttag 518  Q
    |||   |||||||| |||| ||||||||||    
T  26772855 tttggccactttgcttgacacaacttttag 26772884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 682
Target Start/End: Original strand, 38146305 - 38146349
Alignment:
Q  638 ctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||    
T  38146305 ctaagtgtcgatcttctatctagttggtcagtgagaaagttcaca 38146349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 697
Target Start/End: Complemental strand, 52411845 - 52411705
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    |||||||||||| |||||  |||| |||| | | ||||| |||||||||||  ||||||| ||  ||| ||||  | | | ||||| ||| |||||||||    
T  52411845 cccacaagtggtaaaacctcagtcgagtccacatatgtaagttttcctcctgtccattcggacatcataacatctgcaggcctaagcgtcaatcttctat 52411746  T
Q  657 ctagtgtgtcagtcagaaagttcacacgcgactccttcttc 697  Q
    |||||| |||||| | ||||||||||  || ||||||||||    
T  52411745 ctagtgggtcagttaaaaagttcacaaacgtctccttcttc 52411705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 21552665 - 21552716
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaa 441  Q
    |||||| ||||||||||||| ||| ||| |||||||||| ||||||||||||    
T  21552665 ctctatgtagaaggtcaacagtctctgatgctaggaaactgaaaatgtcaaa 21552716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 492
Target Start/End: Complemental strand, 26856872 - 26856770
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| ||||||||||||| ||| |   ||||||||| |||||  |||||| ||| || ||||||||| || |||||||| | ||||| |||| |||||    
T  26856872 ctctatgtagaaggtcaacagtctctagtgctaggaaatcgaaagcgtcaaaagcagatggtataaaagcatgttgattgtcacaacacgctttatcata 26856773  T
Q  490 ttt 492  Q
    |||    
T  26856772 ttt 26856770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 501
Target Start/End: Complemental strand, 7502115 - 7502010
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtat-aaaagtatattgattgtgagaacacactttctcatattttat 495  Q
    |||||||||||||| || ||  ||||||||||| ||||||||||| | |||| |||| ||||  || ||||||||  |||||| ||||||||| ||| |     
T  7502115 tagaaggtcaacaacctctggtgctaggaaaccaaaaatgtcaaaagaaaatggtataaaaaacatgttgattgttcgaacacgctttctcatgtttgac 7502016  T
Q  496 cacttt 501  Q
    ||||||    
T  7502015 cacttt 7502010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 5338640 - 5338708
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaag 458  Q
    |||||| ||||| ||||||||||| |   |||||||| |||||| ||||||| |||||| |||||||||    
T  5338640 ctctatgtagaatgtcaacaatctctagtgctaggaagccgaaagtgtcaaaagcaaattgtataaaag 5338708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 638 - 682
Target Start/End: Original strand, 37992577 - 37992621
Alignment:
Q  638 ctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcaca 682  Q
    ||||||||| |||||||||| |||| |||||| ||||||||||||    
T  37992577 ctaagtgtccatcttctatcaagtgggtcagtgagaaagttcaca 37992621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 557 - 682
Target Start/End: Complemental strand, 127 - 2
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctat 656  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||| |||||  ||| |||| ||   | ||  |||| |||| |||||    
T  127 cccacaagtggtgaaaccccagtcaagtctatacatgcatgttttcctcctacccatccgtacatcataacatccgcgggcctgcgtgttgatcatctat 28  T
Q  657 ctagtgtgtcagtcagaaagttcaca 682  Q
    |||||| ||||||||| |||||||||    
T  27 ctagtgggtcagtcaggaagttcaca 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 390 - 697
Target Start/End: Original strand, 33247 - 33554
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||| || ||  | ||||||||||||||||||||| | |||| ||||||||  || |||||||| ||||||| |||||||||     
T  33247 ctctatgtagaaggtcaacaacctctggtgttaggaaaccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtcagaacacgctttctcatg 33346  T
Q  490 ttttatcactttgc-tgacgcaacttttagagatactcgtccttttgtaaaagccgctacccctaacccccacaagtggtgaaaccctagtcaagtctag 588  Q
    |||   |||||||| ||| || ||||| || | | |  |||||   ||||||| | | || |||||  |||| |||||||||||||| | |||||| |      
T  33347 tttagccactttgcttgatgccactttaag-gttgcctgtcctaccgtaaaaggcccgacacctaa-tcccataagtggtgaaaccccaatcaagtttgc 33444  T
Q  589 acatg--tatgttttcctcctaaccattcgtacgccattacattcgtaagtctaagtgtcgatcttctatctagtgtgtcagtcagaaagttcacacgcg 686  Q
    |||||  ||||||||||||||| |||| ||||| |||| |||| || | | || ||||| |||||||||||||||  | ||||||  ||||||||| |||    
T  33445 acatgcatatgttttcctcctacccatccgtacaccataacatccgcatgcctgagtgttgatcttctatctagt-aggcagtcaagaagttcacaggcg 33543  T
Q  687 actccttcttc 697  Q
     ||||||||||    
T  33544 cctccttcttc 33554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 7609 - 7697
Alignment:
Q  400 aaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcat 488  Q
    |||||||||||||| || ||||||||||| |||| ||||||| |||||| || |||||  || |||||||||||||||| |||||||||    
T  7609 aaggtcaacaatctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcat 7697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 6331 - 6460
Alignment:
Q  390 ctctatttagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgtgagaacacactttctcata 489  Q
    |||||| |||||||||||||  || ||  |||||||||| |||| ||||||| |||||| ||||| ||| || |||||||| ||||||| |||||||||     
T  6331 ctctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacacgctttctcatg 6430  T
Q  490 ttttatcactttgc-tgacgcaacttttag 518  Q
    |||   |||||| | |||||||||||||||    
T  6431 tttggccactttacttgacgcaacttttag 6460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 602
Target Start/End: Original strand, 6497 - 6542
Alignment:
Q  557 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttc 602  Q
    ||||||||||||||||||| ||||||||||| ||| | ||||||||    
T  6497 cccacaagtggtgaaaccccagtcaagtctacacaagcatgttttc 6542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 103110 - 103183
Alignment:
Q  397 tagaaggtcaacaatctgtgaagctaggaaaccgaaaatgtcaaatgcaaatagtataaaagtatattgattgt 470  Q
    |||||||||||||  || ||  ||||||||||||||| ||||||| |||||| ||||||||| || ||||||||    
T  103110 tagaaggtcaacagcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 103183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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