View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5795-Insertion-6 (Length: 600)

Name: NF5795-Insertion-6
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5795-Insertion-6
NF5795-Insertion-6
[»] chr4 (30 HSPs)
chr4 (19-600)||(47585122-47585705)
chr4 (457-542)||(40392726-40392811)
chr4 (458-569)||(30940877-30940988)
chr4 (458-569)||(600837-600948)
chr4 (480-569)||(39001270-39001359)
chr4 (480-569)||(3329869-3329958)
chr4 (480-565)||(50001075-50001160)
chr4 (499-570)||(53619478-53619549)
chr4 (480-569)||(55933605-55933694)
chr4 (458-569)||(16955311-16955422)
chr4 (480-569)||(4419137-4419225)
chr4 (274-351)||(9696329-9696406)
chr4 (468-565)||(23604951-23605048)
chr4 (458-555)||(53170364-53170460)
chr4 (483-555)||(26521365-26521437)
chr4 (495-566)||(23255601-23255672)
chr4 (293-358)||(4431947-4432012)
chr4 (314-371)||(13849350-13849407)
chr4 (279-368)||(24870594-24870683)
chr4 (274-367)||(28758375-28758468)
chr4 (480-569)||(31846976-31847065)
chr4 (482-555)||(50464455-50464528)
chr4 (499-555)||(50442638-50442694)
chr4 (495-570)||(8738093-8738168)
chr4 (518-569)||(25504206-25504257)
chr4 (323-370)||(37340193-37340240)
chr4 (317-367)||(18427810-18427860)
chr4 (468-565)||(34107845-34107942)
chr4 (490-555)||(50463102-50463167)
chr4 (295-371)||(46343323-46343399)
[»] chr7 (34 HSPs)
chr7 (458-569)||(45613987-45614098)
chr7 (458-569)||(21326983-21327094)
chr7 (457-541)||(19277141-19277225)
chr7 (455-536)||(45974777-45974858)
chr7 (458-566)||(982800-982908)
chr7 (458-551)||(43333993-43334087)
chr7 (480-569)||(45003042-45003131)
chr7 (458-542)||(25187103-25187187)
chr7 (458-569)||(27027775-27027886)
chr7 (457-555)||(4501109-4501207)
chr7 (521-569)||(5714954-5715002)
chr7 (314-370)||(21421971-21422027)
chr7 (457-569)||(34772633-34772744)
chr7 (480-547)||(38766197-38766264)
chr7 (480-566)||(28517435-28517521)
chr7 (458-528)||(32681989-32682059)
chr7 (318-371)||(8059839-8059892)
chr7 (520-569)||(48539094-48539143)
chr7 (458-569)||(22197838-22197949)
chr7 (458-569)||(22239872-22239983)
chr7 (521-568)||(38839240-38839287)
chr7 (459-502)||(42295389-42295432)
chr7 (274-365)||(45957371-45957462)
chr7 (274-368)||(6328211-6328305)
chr7 (468-566)||(9281284-9281382)
chr7 (468-566)||(9292255-9292353)
chr7 (314-368)||(12645375-12645429)
chr7 (468-530)||(38832163-38832225)
chr7 (455-493)||(48539288-48539326)
chr7 (458-555)||(27521322-27521419)
chr7 (317-358)||(30627631-30627672)
chr7 (480-565)||(40726629-40726714)
chr7 (271-358)||(41862795-41862882)
chr7 (323-351)||(46734202-46734230)
[»] scaffold0009 (1 HSPs)
scaffold0009 (458-569)||(102957-103068)
[»] chr3 (19 HSPs)
chr3 (458-569)||(32546646-32546757)
chr3 (461-542)||(44687-44768)
chr3 (458-569)||(53785560-53785671)
chr3 (480-569)||(26772631-26772720)
chr3 (470-555)||(37133158-37133243)
chr3 (458-569)||(44198618-44198729)
chr3 (458-545)||(52741681-52741768)
chr3 (468-570)||(49017828-49017930)
chr3 (458-567)||(4763939-4764048)
chr3 (458-569)||(26276461-26276577)
chr3 (467-569)||(13582370-13582472)
chr3 (495-569)||(38671025-38671099)
chr3 (480-553)||(39583390-39583463)
chr3 (451-514)||(39661385-39661448)
chr3 (274-368)||(54923483-54923577)
chr3 (468-567)||(4669810-4669909)
chr3 (458-569)||(21552515-21552626)
chr3 (312-366)||(9174694-9174748)
chr3 (458-555)||(38978958-38979055)
[»] chr2 (24 HSPs)
chr2 (452-569)||(4413211-4413328)
chr2 (458-540)||(20143119-20143201)
chr2 (456-569)||(13413200-13413313)
chr2 (460-552)||(3208406-3208498)
chr2 (458-569)||(15515292-15515403)
chr2 (458-569)||(18745099-18745210)
chr2 (457-568)||(41868054-41868164)
chr2 (456-553)||(42122666-42122763)
chr2 (458-569)||(9685560-9685671)
chr2 (458-569)||(17344489-17344600)
chr2 (506-569)||(28224899-28224962)
chr2 (467-542)||(19161955-19162030)
chr2 (468-555)||(27494172-27494259)
chr2 (323-358)||(499843-499878)
chr2 (458-497)||(1472346-1472385)
chr2 (274-369)||(13491022-13491117)
chr2 (312-358)||(636971-637017)
chr2 (457-547)||(2248492-2248582)
chr2 (464-510)||(5527601-5527647)
chr2 (480-542)||(30602362-30602424)
chr2 (480-542)||(41702145-41702207)
chr2 (520-569)||(3825639-3825688)
chr2 (323-351)||(33898245-33898273)
chr2 (316-364)||(37103323-37103371)
[»] chr1 (30 HSPs)
chr1 (457-568)||(28493477-28493588)
chr1 (458-542)||(19035330-19035414)
chr1 (457-542)||(868573-868658)
chr1 (457-569)||(21472853-21472965)
chr1 (463-555)||(22346751-22346843)
chr1 (457-555)||(1114027-1114125)
chr1 (461-569)||(24177656-24177764)
chr1 (457-553)||(31737483-31737579)
chr1 (458-569)||(45835331-45835441)
chr1 (460-542)||(7213096-7213178)
chr1 (470-562)||(20259949-20260041)
chr1 (458-566)||(28041275-28041383)
chr1 (500-570)||(2764372-2764442)
chr1 (461-555)||(2898556-2898650)
chr1 (480-570)||(5453968-5454058)
chr1 (499-569)||(34644458-34644528)
chr1 (458-563)||(17077967-17078072)
chr1 (458-501)||(7151769-7151812)
chr1 (458-569)||(4611040-4611151)
chr1 (480-567)||(30688430-30688517)
chr1 (316-367)||(33225541-33225592)
chr1 (323-374)||(43837079-43837130)
chr1 (458-541)||(44270008-44270091)
chr1 (273-370)||(8312564-8312661)
chr1 (499-556)||(21934269-21934326)
chr1 (274-369)||(236566-236661)
chr1 (275-369)||(7204546-7204640)
chr1 (506-555)||(7483783-7483832)
chr1 (293-346)||(26763400-26763453)
chr1 (274-370)||(11080998-11081094)
[»] chr8 (16 HSPs)
chr8 (455-552)||(18804461-18804558)
chr8 (458-569)||(22589481-22589592)
chr8 (458-542)||(18596771-18596855)
chr8 (458-539)||(15566130-15566211)
chr8 (480-569)||(38815167-38815256)
chr8 (458-555)||(40223558-40223655)
chr8 (457-569)||(24450972-24451082)
chr8 (499-570)||(39434559-39434630)
chr8 (457-566)||(500092-500201)
chr8 (459-569)||(24124880-24124990)
chr8 (518-569)||(3187881-3187932)
chr8 (293-355)||(1223530-1223592)
chr8 (499-569)||(4699763-4699833)
chr8 (274-344)||(11021358-11021428)
chr8 (323-359)||(3673929-3673965)
chr8 (323-355)||(31941120-31941152)
[»] scaffold0309 (1 HSPs)
scaffold0309 (457-560)||(5174-5277)
[»] chr5 (21 HSPs)
chr5 (458-569)||(15292170-15292281)
chr5 (458-555)||(42921549-42921646)
chr5 (458-565)||(2566244-2566351)
chr5 (461-570)||(14423545-14423648)
chr5 (456-555)||(38875492-38875587)
chr5 (458-569)||(32269942-32270052)
chr5 (315-358)||(42383130-42383173)
chr5 (499-536)||(2917539-2917576)
chr5 (480-569)||(35310321-35310410)
chr5 (490-542)||(11005761-11005813)
chr5 (458-566)||(26212731-26212839)
chr5 (295-358)||(972652-972715)
chr5 (490-569)||(23023478-23023557)
chr5 (295-342)||(42436352-42436399)
chr5 (480-569)||(430475-430564)
chr5 (324-366)||(9599311-9599353)
chr5 (323-361)||(15067226-15067264)
chr5 (323-356)||(14570529-14570562)
chr5 (473-541)||(7143575-7143643)
chr5 (314-370)||(11408368-11408424)
chr5 (314-358)||(22792187-22792231)
[»] scaffold0406 (1 HSPs)
scaffold0406 (469-555)||(6750-6836)
[»] chr6 (14 HSPs)
chr6 (480-555)||(17249464-17249539)
chr6 (458-512)||(34562379-34562433)
chr6 (480-567)||(7749354-7749441)
chr6 (462-569)||(28625786-28625893)
chr6 (480-569)||(3137392-3137481)
chr6 (480-569)||(33220856-33220945)
chr6 (458-569)||(32115569-32115680)
chr6 (458-516)||(45819-45877)
chr6 (323-364)||(28533442-28533483)
chr6 (480-569)||(28543270-28543359)
chr6 (520-558)||(26225735-26225773)
chr6 (460-516)||(2135002-2135058)
chr6 (323-367)||(9297755-9297799)
chr6 (458-542)||(34168772-34168856)
[»] scaffold0244 (1 HSPs)
scaffold0244 (467-541)||(16827-16901)
[»] scaffold0148 (1 HSPs)
scaffold0148 (458-553)||(33101-33196)
[»] scaffold0075 (1 HSPs)
scaffold0075 (457-500)||(13309-13352)
[»] scaffold0027 (1 HSPs)
scaffold0027 (314-368)||(19390-19444)
[»] scaffold0013 (1 HSPs)
scaffold0013 (520-568)||(52663-52711)
[»] scaffold0001 (1 HSPs)
scaffold0001 (319-351)||(396221-396253)


Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 600
Target Start/End: Complemental strand, 47585705 - 47585122
Alignment:
Q  19 aaaaatatctacgatacatgtcattgcctgttgttggttaattataagtattgatacttaaatactattattaatcgaccttaagaaaattaaaggaaat 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47585705 aaaaaaatctacgatacatgtcattgcctgttgttggttaattataagtattgatacttaaatactattattaatcgaccttaagaaaattaaaggaaat 47585606  T
Q  119 tccaatggctcaaatcagctcaaaattaggacatttgttttgggatcacgatttaactttgcatggtgctacctagctacttttgccgttgaagatttga 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47585605 tcaaatggctcaaatcagctcaaaattaggacatttgttttgggatcacgatttaactttgcatggggctacctagctacttttgccgttgaagatttga 47585506  T
Q  219 ccatgtaaaagtgctcgaannnnnnnnagatagataagatgtcaaagccattattcacaca--aagtgaatgtatcgaggttcgaatccaggtcttaacg 316  Q
    ||||||| ||||||| |||        ||||||||||||||| ||||||||||||||||||  ||||| | |||||||||||||||||||||||||||||    
T  47585505 ccatgtataagtgctggaattttttttagatagataagatgtgaaagccattattcacacacaaagtggaggtatcgaggttcgaatccaggtcttaacg 47585406  T
Q  317 tccgatctaacaatttcgacatttttgccaattgaactaggaattatgagacaaagtgttgtaattacttctcggttctttatttatttatttattataa 416  Q
    | ||| |||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||    
T  47585405 ttcgacctaacaatttcagcatttttgccaattgaactaggaattatgggacaaagtgctgtaattacttctcggttctttttttatttgtttattataa 47585306  T
Q  417 attacttctcggttctaattataaaaagaataatgataaattatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgcta 516  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  47585305 attacttctcggatctaattataaaaagaacaatgataaattatataaactattatttacatttgaatagaaggcaaacagacaacaaactacgccgcta 47585206  T
Q  517 cacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacctaaaaacatatttttctctctacgtacctccct 600  Q
     |||||||| |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47585205 aacctttttagatgacaaaaccaatcttcgtaaacacaaaatttatagacctaaaaacatatttttctctctacgtacctccct 47585122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 457 - 542
Target Start/End: Complemental strand, 40392811 - 40392726
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    ||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  40392811 ttatataaaccattatttacacttgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaaccaatc 40392726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 30940988 - 30940877
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||||||||| |||| ||| |||||| ||||| ||||| ||||||||||||||||||| ||||| |||| ||||||| |    
T  30940988 tatataaaccattatttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatcctcatgaacacaaca 30940889  T
Q  558 tttatggaccta 569  Q
    || || ||||||    
T  30940888 ttcatagaccta 30940877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 600948 - 600837
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    ||||||||| |||||||||| |||||||||| |||| |||||||||| || || ||||| || ||||||||||||||||| |||| || ||||||||  |    
T  600948 tatataaacaattatttacacttgaatagaaggcaagcggacaacaagctacgtcgctatacatttttggatggcaaaactaatcatcgtaaacacagca 600849  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  600848 ttaatggaccta 600837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 39001270 - 39001359
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| ||| |||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||| ||| |||||||||    
T  39001270 tgaataggaggcaagcgggcaacaaactgcgccgctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggaccta 39001359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 3329869 - 3329958
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| ||| |||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||  ||| |||||||||    
T  3329869 tgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcatcgtaaacacagcattcatggaccta 3329958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 480 - 565
Target Start/End: Complemental strand, 50001160 - 50001075
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatgga 565  Q
    ||||||| | |||| ||| |||||| ||||||||||| | ||||||||||||||||| |||||||| ||||||||| |||||||||    
T  50001160 tgaataggaggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaacacaacatttatgga 50001075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 499 - 570
Target Start/End: Original strand, 53619478 - 53619549
Alignment:
Q  499 caacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacctaa 570  Q
    |||||| ||||||||||| ||||||||||||||||||||||||  || ||||||||| ||| ||||||||||    
T  53619478 caacaagctgcgccgctagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaa 53619549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 569
Target Start/End: Complemental strand, 55933694 - 55933605
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| |||||||||||||||| ||||| || |||||||||||||||| ||||| || ||||||||| ||| | |||||||    
T  55933694 tgaataggaggcaagcggacaacaaactgcgtcgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattcacggaccta 55933605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 16955311 - 16955422
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||| ||||| |||| |||||||||||||||| ||    | |||||| |||||| ||| ||||| || ||||||||| |    
T  16955311 tatataaaccattatttacacttgagtagaaggcaagcggacaacaaactgcgtcgtcggatcttttttgatggccaaatcaatcctcgtaaacacaaca 16955410  T
Q  558 tttatggaccta 569  Q
    || |||| ||||    
T  16955411 ttcatgggccta 16955422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 4419137 - 4419225
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| ||| |||||| ||||||||||| |  |||||||||||||||||||||| || ||||||||| ||| |||||||||    
T  4419137 tgaataggaggcaagcgggcaacaagctgcgccgctagat-tttttggatggcaaaaccaatcatcgtaaacacaacattcatggaccta 4419225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 351
Target Start/End: Original strand, 9696329 - 9696406
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattga 351  Q
    |||| |||||| | ||| ||||||||||| || | || |||||| ||| |||||||||||||||||||||||||||||    
T  9696329 cacataaagtggaggtaccgaggttcgaaccccgatcataacgttcgacctaacaatttcgacatttttgccaattga 9696406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 565
Target Start/End: Original strand, 23604951 - 23605048
Alignment:
Q  468 attatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatgga 565  Q
    ||||||||||  |||||||||  ||| ||||||||||  |||||||||| ||||||||||||| ||||| ||||| |||  ||||||| ||| |||||    
T  23604951 attatttacacatgaatagaagacaaccggacaacaagttgcgccgctagacctttttggatgacaaaatcaatcctcaacaacacaatattcatgga 23605048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 555
Target Start/End: Original strand, 53170364 - 53170460
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||||||||||||||||||||||||||||| |||| | |||||| | |||| | |||| |||||||| ||| |||||| ||||| || | |||||||    
T  53170364 tatataaaccattatttacatttgaatagaaggcaagcagacaac-agctgcactgctagacctttttagatagcaaaatcaatcctcgtgaacacaa 53170460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 555
Target Start/End: Original strand, 26521365 - 26521437
Alignment:
Q  483 atagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||||| |||| ||||||| || ||| ||||||| ||||||||||||| ||||||||||| || |||||||||    
T  26521365 atagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatcctcgtaaacacaa 26521437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 566
Target Start/End: Original strand, 23255601 - 23255672
Alignment:
Q  495 cggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggac 566  Q
    |||||||||| ||||||||||| || ||| |||||||||||| ||||| || ||||||||| ||| ||||||    
T  23255601 cggacaacaagctgcgccgctagacttttctggatggcaaaatcaatcctcgtaaacacaatattcatggac 23255672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 4431947 - 4432012
Alignment:
Q  293 gaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactagga 358  Q
    |||||||||| || |||| || |||||||||||| ||||| ||||||||||||| |||| ||||||    
T  4431947 gaggttcgaaccccggtcatagcgtccgatctaataattttgacatttttgccagttgagctagga 4432012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 13849407 - 13849350
Alignment:
Q  314 acgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagacaaa 371  Q
    ||||| || ||||||||||||||||||||| || |||| |||||| ||||||||||||    
T  13849407 acgtctgacctaacaatttcgacatttttgtcagttgagctaggacttatgagacaaa 13849350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 368
Target Start/End: Complemental strand, 24870683 - 24870594
Alignment:
Q  279 aaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagac 368  Q
    |||||| | ||| ||||||||||| |  |||| | |||||||  |||||||||||| ||||||||||| |||| |||||| |||||||||    
T  24870683 aaagtggaggtaccgaggttcgaacctcggtcattacgtccggcctaacaatttcggcatttttgccagttgagctaggacttatgagac 24870594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 28758468 - 28758375
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgaga 367  Q
    ||||||||||| | |||  | ||||||||  | |||| | |||||||| |||| ||||||| ||||||||||| ||||||||||| ||||||||    
T  28758468 cacacaaagtggaggtactggggttcgaactccggtcatgacgtccgacctaataatttcggcatttttgccagttgaactaggatttatgaga 28758375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 31846976 - 31847065
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| ||| |||||| ||||||||||| |||||||||||||||| ||| |||| ||   ||||||| ||| |||||||||    
T  31846976 tgaataggaggcaagcgggcaacaacctgcgccgctagacctttttggatggcataacgaatcctcgctaacacaacattcatggaccta 31847065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 482 - 555
Target Start/End: Complemental strand, 50464528 - 50464455
Alignment:
Q  482 aatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||||| |||| |||||||||| |||||||||||   |||||||||||||||||  |||| || |||||||||    
T  50464528 aatagaaggcaagcggacaacaagctgcgccgctaggtctttttggatggcaaaataaatcctcgtaaacacaa 50464455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 555
Target Start/End: Complemental strand, 50442694 - 50442638
Alignment:
Q  499 caacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||||| ||||||| |||  |||||||||||||||||||||||| || |||||||||    
T  50442694 caacaagctgcgccactaaccctttttggatggcaaaaccaatcctcttaaacacaa 50442638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 570
Target Start/End: Original strand, 8738093 - 8738168
Alignment:
Q  495 cggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacctaa 570  Q
    |||| ||||||||||||||||| || |||||||||| ||||| |||||||  || |||||| ||| ||| ||||||    
T  8738093 cggataacaaactgcgccgctaaacttttttggatgacaaaatcaatctttgtatacacaacattcatgaacctaa 8738168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 569
Target Start/End: Original strand, 25504206 - 25504257
Alignment:
Q  518 acctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||||| ||||||||| ||||| |||||||||||| ||| |||||||||    
T  25504206 acctttttgaatggcaaaagcaatcctcataaacacaatattcatggaccta 25504257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 37340193 - 37340240
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaactaggaattatgagacaa 370  Q
    ||||||||||||||||||||  || ||||||||||| |||||||||||    
T  37340193 ctaacaatttcgacatttttatcagttgaactaggacttatgagacaa 37340240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 18427810 - 18427860
Alignment:
Q  317 tccgatctaacaatttcgacatttttgccaattgaactaggaattatgaga 367  Q
    |||||||||||||||| |||||||| |||| ||||| ||||| ||||||||    
T  18427810 tccgatctaacaattttgacattttcgccagttgaattaggacttatgaga 18427860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 565
Target Start/End: Complemental strand, 34107942 - 34107845
Alignment:
Q  468 attatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatgga 565  Q
    |||||||||| ||||||||||  |||  || |||||| ||| |||| || || |||||||||| ||||||||||| || | ||||||| ||| |||||    
T  34107942 attatttacacttgaatagaaaacaagtgggcaacaagctgtgccgttaaacttttttggatgacaaaaccaatcctcgtgaacacaacattcatgga 34107845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 555
Target Start/End: Complemental strand, 50463167 - 50463102
Alignment:
Q  490 gcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||| |||||| ||| |||||||||||   |||||||||||||||||| |||| || |||||||||    
T  50463167 gcaagcggacagcaagctgcgccgctaggtctttttggatggcaaaacaaatcctcgtaaacacaa 50463102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 46343399 - 46343323
Alignment:
Q  295 ggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagacaaa 371  Q
    |||||||| || |||| | |||||||  |||||||||||| || ||||| || |||| |||||| ||||||||||||    
T  46343399 ggttcgaaccccggtcatgacgtccggcctaacaatttcggcacttttgtcagttgagctaggacttatgagacaaa 46343323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 45614098 - 45613987
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| ||||||| ||||||||||||||||| || ||||||||| |    
T  45614098 tatataaaccattatttacagttgaatagaaggcaagcggacaacaagctgcgccgctagaccttttcggatggcaaaaccaatcctcgtaaacacaaca 45613999  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  45613998 ttcatggaccta 45613987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 21327094 - 21326983
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||||||||| |||| | |||||||| |||||||| || ||||||||||||||||||| ||||| || | ||||||| |    
T  21327094 tatataaaccattatttacacttgaatagaaggcaagcagacaacaagctgcgccgttagacctttttggatggcaaaatcaatcctcgtgaacacaaca 21326995  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  21326994 ttcatggaccta 21326983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 457 - 541
Target Start/End: Original strand, 19277141 - 19277225
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaat 541  Q
    |||||||||||||||||||||||||||||||| |||  ||| ||| || ||||||||||| ||||||||||||||||||||||||    
T  19277141 ttatataaaccattatttacatttgaatagaaggcaggcgggcaataagctgcgccgctagacctttttggatggcaaaaccaat 19277225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 455 - 536
Target Start/End: Complemental strand, 45974858 - 45974777
Alignment:
Q  455 aattatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaa 536  Q
    ||||||||||||||||||||||| ||||||||||  ||| |||||||||| ||||||| ||| ||||||||||||| |||||    
T  45974858 aattatataaaccattatttacacttgaatagaagacaagcggacaacaagctgcgccactagacctttttggatgacaaaa 45974777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 458 - 566
Target Start/End: Original strand, 982800 - 982908
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||| | |||||||||| |||||| | |||||| ||| | ||||| ||||||||||||||||| ||||||| || | ||||||| |    
T  982800 tatataaaccattatttaaacttgaatagaaggcaaacaggcaacaagctgtgtcgctagacctttttggatggcaataccaatcctcgtgaacacaaca 982899  T
Q  558 tttatggac 566  Q
    || ||||||    
T  982900 ttcatggac 982908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 43334087 - 43333993
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgc-aaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaac 551  Q
    |||||||||||||||||||| ||||||||||||| ||| || |||||| ||||||||| |   ||||||| ||||||||||||||| ||||||||    
T  43334087 tatataaaccattatttacacttgaatagaatgcaaaaggggcaacaagctgcgccgccaagtctttttgaatggcaaaaccaatcatcataaac 43333993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 480 - 569
Target Start/End: Complemental strand, 45003131 - 45003042
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| ||||||| || ||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||| |||| ||||    
T  45003131 tgaataggaggcaagcggacaataagctgcgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtccta 45003042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 542
Target Start/End: Complemental strand, 25187187 - 25187103
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    |||||||||||||||||||| |||||||||| |||| ||| |||||| ||||||||||| | |||||| ||||| |||| |||||    
T  25187187 tatataaaccattatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagatctttttagatggtaaaatcaatc 25187103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 27027886 - 27027775
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    ||||||||| ||||||||| ||||||||||| ||||  ||  ||||| || | |||||| | |||||||||| |||||||||||| || | ||||||| |    
T  27027886 tatataaactattatttacgtttgaatagaaggcaagtgggtaacaagctacaccgctagatctttttggatagcaaaaccaatcctcgtgaacacaaca 27027787  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  27027786 ttcatggaccta 27027775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 555
Target Start/End: Original strand, 4501109 - 4501207
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||||||||||||||||||| ||||||| || |||| ||||||| ||  ||||| |||| |||||||| |||| |||| | |||| || |||||||||    
T  4501109 ttatataaaccattatttacacttgaatataaggcaagcggacaataagatgcgctgctagacctttttagatgacaaagctaatcctcgtaaacacaa 4501207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 5714954 - 5715002
Alignment:
Q  521 tttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  5714954 tttttagatgacaaaaccaatcttcataaacacaacatttatggaccta 5715002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 21422027 - 21421971
Alignment:
Q  314 acgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagacaa 370  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| ||||| |||||    
T  21422027 acgtccgatctaacaatttcgatatttttaccagttgaactaggatttatgggacaa 21421971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 569
Target Start/End: Original strand, 34772633 - 34772744
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaa 556  Q
    |||||||||| |||||||||| || |||||||  ||| | || |||||| ||||||| || || |||||| ||||||||||||||  || |||||||||     
T  34772633 ttatataaactattatttacactt-aatagaagacaagcagataacaaattgcgccgttaaacttttttgaatggcaaaaccaattatcgtaaacacaat 34772731  T
Q  557 atttatggaccta 569  Q
    ||| |||||||||    
T  34772732 attcatggaccta 34772744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 547
Target Start/End: Original strand, 38766197 - 38766264
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcat 547  Q
    ||||||| | |||| ||| |||||| |||||| |||| |||||||||||||||||||||||| |||||    
T  38766197 tgaataggaggcaagcgggcaacaagctgcgcagctagacctttttggatggcaaaaccaatattcat 38766264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 566
Target Start/End: Complemental strand, 28517521 - 28517435
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggac 566  Q
    ||||||| | ||| |||| |||||| ||| | ||||| || |||||||||||||||||||||| || ||||||||| ||| ||||||    
T  28517521 tgaataggaggcagacgggcaacaagctgtgtcgctagacttttttggatggcaaaaccaatcctcgtaaacacaacattcatggac 28517435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 32682059 - 32681989
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttgga 528  Q
    |||||||||||||||||||| |||||||||| ||||  |||||| || ||||||||| |  ||||||||||    
T  32682059 tatataaaccattatttacacttgaatagaaggcaagtggacaataagctgcgccgccaagcctttttgga 32681989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 8059892 - 8059839
Alignment:
Q  318 ccgatctaacaatttcgacatttttgccaattgaactaggaattatgagacaaa 371  Q
    |||| |||||||||| |||||||||||||||||| | |||| ||||||||||||    
T  8059892 ccgacctaacaattttgacatttttgccaattgagccaggacttatgagacaaa 8059839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 48539094 - 48539143
Alignment:
Q  520 ctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||||||||||||||||||| || ||||||||| ||| |||||||||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggaccta 48539143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 22197838 - 22197949
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||  ||||||||||  ||| ||| ||||||  ||| |||| |  |||||||||||| ||||| ||||  || ||||||||| |    
T  22197838 tatataaaccattatttactcttgaatagaagacaagcgggcaacaagttgcaccgccaagcctttttggatgacaaaatcaattatcgtaaacacaaca 22197937  T
Q  558 tttatggaccta 569  Q
    || || ||||||    
T  22197938 ttcattgaccta 22197949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 22239983 - 22239872
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||  ||||||||||  ||| ||| ||||||  ||| |||| |  |||||||||||| ||||| ||||  || ||||||||| |    
T  22239983 tatataaaccattatttactcttgaatagaagacaagcgggcaacaagttgcaccgccaagcctttttggatgacaaaatcaattatcgtaaacacaaca 22239884  T
Q  558 tttatggaccta 569  Q
    || || ||||||    
T  22239883 ttcattgaccta 22239872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 521 - 568
Target Start/End: Original strand, 38839240 - 38839287
Alignment:
Q  521 tttttggatggcaaaaccaatcttcataaacacaaaatttatggacct 568  Q
    ||||||||||| ||||||||||||| ||||||||| ||| ||||||||    
T  38839240 tttttggatggtaaaaccaatcttcgtaaacacaacattcatggacct 38839287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 502
Target Start/End: Complemental strand, 42295432 - 42295389
Alignment:
Q  459 atataaaccattatttacatttgaatagaatgcaaacggacaac 502  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||    
T  42295432 atataaaccattatttatatttgaatagaaggcaagcggacaac 42295389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 45957371 - 45957462
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatga 365  Q
    ||||||||||| | ||| || |||||||| || | || | ||||||| | ||||||||| | |||||||||||||||| |||||| ||||||    
T  45957371 cacacaaagtggaggtaccggggttcgaaccctgatcatgacgtccggtttaacaattttggcatttttgccaattgagctaggacttatga 45957462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 368
Target Start/End: Original strand, 6328211 - 6328305
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagac 368  Q
    |||| |||||| | |||||| |||||||| ||  ||| | |||||| | |||||||||| ||||||||||||| |||| ||| || |||||||||    
T  6328211 cacataaagtggaggtatcggggttcgaaccctagtcatgacgtccaacctaacaattttgacatttttgccagttgagctaagacttatgagac 6328305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 9281382 - 9281284
Alignment:
Q  468 attatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggac 566  Q
    |||| |||||| |||||| || | || | ||||||||||||| ||| ||  ||||||||||| |||||||||||  || ||||||||| ||| ||||||    
T  9281382 attaattacatatgaatataaggtaagcagacaacaaactgcaccgttaagcctttttggattgcaaaaccaattctcctaaacacaacattaatggac 9281284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 9292353 - 9292255
Alignment:
Q  468 attatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggac 566  Q
    |||| |||||| |||||| || | || | ||||||||||||| ||| ||  ||||||||||| |||||||||||  || ||||||||| ||| ||||||    
T  9292353 attaattacatatgaatataaggtaagcagacaacaaactgcaccgttaagcctttttggattgcaaaaccaattctcctaaacacaacattaatggac 9292255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 12645375 - 12645429
Alignment:
Q  314 acgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagac 368  Q
    |||||||  ||||||||||||||||||||| || ||||||||| | |||||||||    
T  12645375 acgtccggcctaacaatttcgacatttttggcagttgaactagaacttatgagac 12645429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 530
Target Start/End: Original strand, 38832163 - 38832225
Alignment:
Q  468 attatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatg 530  Q
    |||| |||||| ||||||| | |||| ||| |||||| ||||||||||| |||||||||||||    
T  38832163 attacttacatatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatg 38832225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 493
Target Start/End: Complemental strand, 48539326 - 48539288
Alignment:
Q  455 aattatataaaccattatttacatttgaatagaatgcaa 493  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  48539326 aattatataaaccattatttacacttgaatagaaggcaa 48539288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 555
Target Start/End: Original strand, 27521322 - 27521419
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||||||||||||||||||| |||||| ||| ||||| ||  ||||  |||||| |  | || ||||| |||||||||| ||||| || |||||||||    
T  27521322 tatataaaccattatttacacttgaatggaaggcaaatgggtaacagcctgcgctgtcatacatttttcgatggcaaaatcaatcctcgtaaacacaa 27521419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 30627672 - 30627631
Alignment:
Q  317 tccgatctaacaatttcgacatttttgccaattgaactagga 358  Q
    ||||||||||||||||||||||||||| || |||| ||||||    
T  30627672 tccgatctaacaatttcgacatttttgtcagttgagctagga 30627631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 565
Target Start/End: Complemental strand, 40726714 - 40726629
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatgga 565  Q
    ||||||| | |||| ||| |||||| |||||  | || || |||||||||||||||| ||||| |||||||||||| ||| |||||    
T  40726714 tgaataggaggcaagcgggcaacaagctgcgatgttagacatttttggatggcaaaatcaatcctcataaacacaacattcatgga 40726629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 41862882 - 41862795
Alignment:
Q  271 attcacaca-aagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactagga 358  Q
    ||||||||| ||||||| ||| || |||||||| || |||  | || ||||| ||||||||||||||| ||||||||||| ||||||||    
T  41862882 attcacacataagtgaaggtaccggggttcgaaccccggttatgacatccgacctaacaatttcgaca-ttttgccaattaaactagga 41862795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 46734202 - 46734230
Alignment:
Q  323 ctaacaatttcgacatttttgccaattga 351  Q
    |||||||||||||||||||||||||||||    
T  46734202 ctaacaatttcgacatttttgccaattga 46734230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 102957 - 103068
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||||||||| |||| ||| ||||||  |||||||||| ||||||||||||||||||||||||| || ||||||||| |    
T  102957 tatataaaccattatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaaca 103056  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  103057 ttcatggaccta 103068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 32546646 - 32546757
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||||||||| |||| ||| |||||| ||||||||||| ||||||||||||||||||||||||| || | ||||||| |    
T  32546646 tatataaaccattatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaaca 32546745  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  32546746 ttcatggaccta 32546757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 461 - 542
Target Start/End: Original strand, 44687 - 44768
Alignment:
Q  461 ataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    ||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  44687 ataaaccattatttacacttgaatagaaggcaagcgggcaacaaactgcgccgctagacctttttggatggcaaaacaaatc 44768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 53785560 - 53785671
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||||||||| |||| ||| |||||| || |||||||  ||||| ||||||||||||||||||| || |||||| || |    
T  53785560 tatataaaccattatttacacttgaatagaaggcaagcgggcaacaagctacgccgctggaccttgttggatggcaaaaccaatcctcgtaaacataaca 53785659  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  53785660 ttcatggaccta 53785671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 26772631 - 26772720
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| ||| |||||| ||||||||||| ||||||||||||||||||| ||||| || ||||||||| ||| |||||||||    
T  26772631 tgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggaccta 26772720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 555
Target Start/End: Complemental strand, 37133243 - 37133158
Alignment:
Q  470 tatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||||||  |||||||||  |||  ||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||    
T  37133243 tatttacacctgaatagaagacaatgggacaacaaactgcgccgctagacctttttggatcgcaaaaccaatccttataaacacaa 37133158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 44198618 - 44198729
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    ||||||||  |||||||||| |||||||||| |||| |||||||||| ||| | ||||  ||||||||||||||||||| ||||  ||  |||||||| |    
T  44198618 tatataaattattatttacacttgaatagaaggcaagcggacaacaagctgtgtcgctcaacctttttggatggcaaaatcaattatcgcaaacacaaca 44198717  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  44198718 ttcatggaccta 44198729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 458 - 545
Target Start/End: Complemental strand, 52741768 - 52741681
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttc 545  Q
    |||||||||||||||||||| |||||||||| || | ||| ||| ||  |||| ||||| |||||||||||||||||||| |||||||    
T  52741768 tatataaaccattatttacacttgaatagaaggcgagcgggcaataagttgcgtcgctagacctttttggatggcaaaacaaatcttc 52741681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 570
Target Start/End: Original strand, 49017828 - 49017930
Alignment:
Q  468 attatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacc 567  Q
    |||||||||| |||||||||| |||| |||||||||| |||| ||||     ||||||||||||||||| ||||| |||||||||||| ||| || ||||    
T  49017828 attatttacacttgaatagaaggcaagcggacaacaagctgcaccgccgatactttttggatggcaaaatcaatcctcataaacacaacattcattgacc 49017927  T
Q  568 taa 570  Q
    |||    
T  49017928 taa 49017930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 567
Target Start/End: Complemental strand, 4764048 - 4763939
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||||||||| |||| ||| ||||||  |||||| | |  ||||||||||||||||  | |||| || ||||||||| |    
T  4764048 tatataaaccattatttacacttgaatagaaggcaagcgggcaacaagttgcgccaccaagcctttttggatggcaattctaatcctcgtaaacacaaca 4763949  T
Q  558 tttatggacc 567  Q
    || |||||||    
T  4763948 ttcatggacc 4763939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 26276461 - 26276577
Alignment:
Q  458 tatataaaccattatttacatttgaatagaat-----gcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaaca 552  Q
    |||||||||||||||||||| |||||| |||      |||| ||| |||||| || | |||||| | ||||||||||||||||| ||||| |||||||||    
T  26276461 tatataaaccattatttacacttgaattgaagtgaaggcaagcgggcaacaagctacaccgctagatctttttggatggcaaaatcaatcctcataaaca 26276560  T
Q  553 caaaatttatggaccta 569  Q
    ||| ||| |||||||||    
T  26276561 caacattcatggaccta 26276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 569
Target Start/End: Original strand, 13582370 - 13582472
Alignment:
Q  467 cattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggac 566  Q
    ||||||||| | |||||||||| |||| ||| ||| |||| ||| |||||  |||||||||||||| ||| |||||||| ||||||||| ||| |||| |    
T  13582370 cattatttagacttgaatagaaggcaagcgggcaataaacagcgtcgctaggcctttttggatggctaaatcaatcttcgtaaacacaacattcatggtc 13582469  T
Q  567 cta 569  Q
    |||    
T  13582470 cta 13582472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 569
Target Start/End: Complemental strand, 38671099 - 38671025
Alignment:
Q  495 cggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    |||||||||| ||||||||||| || ||||| |||||||||||||||| || || |||||| ||| |||||||||    
T  38671099 cggacaacaagctgcgccgctagacttttttagatggcaaaaccaatcctcgtacacacaacattcatggaccta 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 553
Target Start/End: Complemental strand, 39583463 - 39583390
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacac 553  Q
    ||||||||| |||| | ||||||||  |||||||||| ||||||||||||||||||| ||||| || |||||||    
T  39583463 tgaatagaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacac 39583390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 514
Target Start/End: Complemental strand, 39661448 - 39661385
Alignment:
Q  451 gataaattatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgc 514  Q
    |||||| |||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||    
T  39661448 gataaaatatataaaccattatttacacttgaatagaaagcacgcgggcaacaagctgcgccgc 39661385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 54923577 - 54923483
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagac 368  Q
    |||||||| || | ||||||  ||||||| || |||| | |||||||| |||||||||||||||||||| ||| ||||  ||||| |||||||||    
T  54923577 cacacaaaatggaagtatcggagttcgaaccccggtcatgacgtccgacctaacaatttcgacatttttaccagttgagttaggacttatgagac 54923483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 567
Target Start/End: Complemental strand, 4669909 - 4669810
Alignment:
Q  468 attatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacc 567  Q
    |||||||||| || |||  || |||| ||| |||||| ||||||||| | ||||||||||||  ||||| ||||| || ||||||||| ||| |||||||    
T  4669909 attatttacactttaatcaaaggcaagcgggcaacaagctgcgccgccaaacctttttggataacaaaatcaatcatcgtaaacacaacattcatggacc 4669810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 21552515 - 21552626
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||| | ||||||||||| |||||||||| | |||||| ||||||  |||||||  |   ||||||||||| ||||||||||  |  ||||||||| |    
T  21552515 tatatatatcattatttacacttgaatagaaggtaaacgggcaacaagttgcgccgtcaagtctttttggatgtcaaaaccaattcttgtaaacacaaca 21552614  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  21552615 ttcatggaccta 21552626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 9174694 - 9174748
Alignment:
Q  312 taacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgag 366  Q
    ||||||| ||||||||||||| |||||||||  ||||||| |||||| |||||||    
T  9174694 taacgtctgatctaacaattttgacatttttatcaattgagctaggatttatgag 9174748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 555
Target Start/End: Complemental strand, 38979055 - 38978958
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||||||| ||||||||||| ||||||| ||  | ||||| ||||||  ||||  | ||  ||||||||||||||||||| ||| ||| |||||||||    
T  38979055 tatataaatcattatttacacttgaatataagactaacgggcaacaagttgcgttgttaagcctttttggatggcaaaactaattttcgtaaacacaa 38978958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 452 - 569
Target Start/End: Complemental strand, 4413328 - 4413211
Alignment:
Q  452 ataaattatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaac 551  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  || |||||| ||||||||||| ||||||||||||||||||| ||||| |||| |||    
T  4413328 ataaattatataaacaattatttacacttgaatagaaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcatgaac 4413229  T
Q  552 acaaaatttatggaccta 569  Q
    |||| ||| |||||||||    
T  4413228 acaacattcatggaccta 4413211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 458 - 540
Target Start/End: Complemental strand, 20143201 - 20143119
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaa 540  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||||| |||||||||||||||||||||||    
T  20143201 tatataaaccattatttacatttgaatagaaggcaaacagacaacaagttgcgccgctagacctttttggatggcaaaaccaa 20143119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 13413200 - 13413313
Alignment:
Q  456 attatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||||||||||||||||||||| ||||||||||  ||| |||||||||| ||| |||| ||  |||||||||||||||||||||||  ||||||||||||    
T  13413200 attatataaaccattatttacacttgaatagaagacaagcggacaacaagctgagccgttaggcctttttggatggcaaaaccaattctcataaacacaa 13413299  T
Q  556 aatttatggaccta 569  Q
     ||| |||||||||    
T  13413300 cattcatggaccta 13413313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 460 - 552
Target Start/End: Complemental strand, 3208498 - 3208406
Alignment:
Q  460 tataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaaca 552  Q
    |||||||||||||||||| |||||||||| |||| ||| |||||| ||||||||||| ||||||||||||||||||||||||| || ||||||    
T  3208498 tataaaccattatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctaaacctttttggatggcaaaaccaatcctcgtaaaca 3208406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 15515403 - 15515292
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||| || |||||||||||||||||||||| || | ||||||| |    
T  15515403 tatataaaccattatttacacttgagtagaaggcaaacaggcaacaaactgcgccgctagacttttttggatggcaaaaccaatcctcgtgaacacaaca 15515304  T
Q  558 tttatggaccta 569  Q
    ||  ||||||||    
T  15515303 ttggtggaccta 15515292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 18745210 - 18745099
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| ||||||||||  ||| ||  ||| || ||||||||||| ||||||||||||||||||||||||| | |||||||||| |    
T  18745210 tatataaaccattatttacacttgaatagaagacaagcgagcaataagctgcgccgctagacctttttggatggcaaaaccaatccttataaacacaaca 18745111  T
Q  558 tttatggaccta 569  Q
    || || ||||||    
T  18745110 ttcatagaccta 18745099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 457 - 568
Target Start/End: Complemental strand, 41868164 - 41868054
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaa 556  Q
    ||||||||||||||||||||| |||||||||| |||| ||| ||||||  |||||||||| | |||||||| |||||||||||||| || |||||||||     
T  41868164 ttatataaaccattatttacacttgaatagaaagcaagcgggcaacaagttgcgccgctagatctttttgg-tggcaaaaccaatcctcgtaaacacaac 41868066  T
Q  557 atttatggacct 568  Q
    ||| ||||||||    
T  41868065 attcatggacct 41868054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 456 - 553
Target Start/End: Original strand, 42122666 - 42122763
Alignment:
Q  456 attatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacac 553  Q
    |||||||||||||||||||||| |||||||||| |||| || |||| || ||||||||||| || ||||||||||||||||||| || || |||||||    
T  42122666 attatataaaccattatttacacttgaatagaaggcaagcgaacaataagctgcgccgctagacttttttggatggcaaaaccagtcctcgtaaacac 42122763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 9685671 - 9685560
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    ||||||||  ||| |||||||||||||| || |||| ||| |||||| ||||||||||| ||||||||||||||||||| |||||||  | ||||||| |    
T  9685671 tatataaattattgtttacatttgaatataaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaacaatctttgtgaacacaaca 9685572  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  9685571 ttcatggaccta 9685560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 17344489 - 17344600
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||| ||||||||||| |||||||||| |||| | | |||||| |||||||| || |||||||||||| | |||| ||||| || ||||||||| |    
T  17344489 tatataaatcattatttacacttgaatagaaggcaagccggcaacaagctgcgccgatagacctttttggatcgaaaaatcaatcctcgtaaacacaaca 17344588  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  17344589 ttcatggaccta 17344600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 28224899 - 28224962
Alignment:
Q  506 ctgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| || ||||||    
T  28224899 ctgcgccgctagacctttttggatggcaaaacaaatcttcataaacacaacattcattgaccta 28224962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 542
Target Start/End: Complemental strand, 19162030 - 19161955
Alignment:
Q  467 cattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    |||||||||||||||||||||| |||| |||||| ||| ||||||| ||||  ||||||||||| ||||| |||||    
T  19162030 cattatttacatttgaatagaaagcaagcggacagcaagctgcgccactacgtctttttggatgacaaaatcaatc 19161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 555
Target Start/End: Original strand, 27494172 - 27494259
Alignment:
Q  468 attatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||| |||||| ||||||| | |||| | | |||||| |||||||| || |||||||||||||||||||||||| ||| |||||||||    
T  27494172 attacttacatatgaataggaggcaagcaggcaacaagctgcgccgttagacctttttggatggcaaaaccaatattcgtaaacacaa 27494259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 358
Target Start/End: Original strand, 499843 - 499878
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaactagga 358  Q
    |||||||||||| |||||||||||||||||||||||    
T  499843 ctaacaatttcggcatttttgccaattgaactagga 499878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 497
Target Start/End: Original strand, 1472346 - 1472385
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacgg 497  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  1472346 tatataaaccattatttacacttgaatagaaggcaaacgg 1472385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 13491117 - 13491022
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagaca 369  Q
    ||||||||||| | |||| |||||||||| || |||| | |||||||   |||||||||||  |||||||||| |||| ||| || ||||||||||    
T  13491117 cacacaaagtggaggtattgaggttcgaaccccggtcatgacgtccggcataacaatttcggtatttttgccagttgagctatgacttatgagaca 13491022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 637017 - 636971
Alignment:
Q  312 taacgtccgatctaacaatttcgacatttttgccaattgaactagga 358  Q
    ||||||||| ||||||||||||||||||||| ||  |||||||||||    
T  637017 taacgtccggtctaacaatttcgacatttttaccggttgaactagga 636971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 547
Target Start/End: Original strand, 2248492 - 2248582
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcat 547  Q
    ||||||||||||||||||||| ||||| |||| |||| |||  |||| | || ||||||  | |||||| ||||| |||||||||| ||||    
T  2248492 ttatataaaccattatttacacttgaacagaaggcaagcgggtaacagattgtgccgctggatctttttagatggtaaaaccaatcatcat 2248582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 510
Target Start/End: Original strand, 5527601 - 5527647
Alignment:
Q  464 aaccattatttacatttgaatagaatgcaaacggacaacaaactgcg 510  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  5527601 aaccattatttacattcgaatagaagacaagcggacaacaaactgcg 5527647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 542
Target Start/End: Original strand, 30602362 - 30602424
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    ||||||||| |||  ||| |||||| |||||| ||||  ||||||||||||||||||||||||    
T  30602362 tgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatc 30602424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 542
Target Start/End: Original strand, 41702145 - 41702207
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    ||||||||| ||||  || |||||| ||||||| |||  ||||||||||||||||||||||||    
T  41702145 tgaatagaaggcaagtgggcaacaagctgcgccactaggcctttttggatggcaaaaccaatc 41702207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 3825639 - 3825688
Alignment:
Q  520 ctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||||||| ||||| | |||||||||||||||| |||||||| ||||    
T  3825639 ctttttggatgacaaaatcgatcttcataaacacaacatttatggtccta 3825688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 33898273 - 33898245
Alignment:
Q  323 ctaacaatttcgacatttttgccaattga 351  Q
    |||||||||||||||||||||||||||||    
T  33898273 ctaacaatttcgacatttttgccaattga 33898245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 37103371 - 37103323
Alignment:
Q  316 gtccgatctaacaatttcgacatttttgccaattgaactaggaattatg 364  Q
    ||||| |||||||||||||||||||||| || |||| |||||| |||||    
T  37103371 gtccggtctaacaatttcgacatttttgtcagttgagctaggacttatg 37103323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 457 - 568
Target Start/End: Complemental strand, 28493588 - 28493477
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaa 556  Q
    ||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||| ||||| || | |||| ||     
T  28493588 ttatataaatcattatttacacttgaatagaagacaaacggacaacaaactgcgccgctagacctttttggatggcaaaatcaatcctcgtgaacataac 28493489  T
Q  557 atttatggacct 568  Q
    ||| ||||||||    
T  28493488 attcatggacct 28493477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 458 - 542
Target Start/End: Original strand, 19035330 - 19035414
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  19035330 tatataaaccattatttacacttgaatagaaggcaatcggacaacaagctgcgccgctagacctttttggatgacaaaaccaatc 19035414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 457 - 542
Target Start/End: Complemental strand, 868658 - 868573
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    |||||||||| |||||||||| |||||||||| |||| ||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  868658 ttatataaacaattatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatc 868573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 457 - 569
Target Start/End: Original strand, 21472853 - 21472965
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaa 556  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||| ||  |||||||||| |||||||||||||||||||||| || || | ||| |||     
T  21472853 ttatataaaccattatttacacttgaatagaatgcaagcgggcaataagttgcgccgctagacctttttggatggcaaaaccagtcctcctgaacgcaac 21472952  T
Q  557 atttatggaccta 569  Q
    ||| |||||||||    
T  21472953 attcatggaccta 21472965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 463 - 555
Target Start/End: Original strand, 22346751 - 22346843
Alignment:
Q  463 aaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||||| |||| || | |||||||    
T  22346751 aaaccattatttacacttgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaactaatcctcgtgaacacaa 22346843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 555
Target Start/End: Complemental strand, 1114125 - 1114027
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||||||||||||||||||| ||||||||||  ||| ||| |||||| ||| |||| || ||||||||||||||||||||||||| || |||||||||    
T  1114125 ttatataaaccattatttacacttgaatagaagccaagcgggcaacaagctgtgccgttagacctttttggatggcaaaaccaatcctcgtaaacacaa 1114027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 461 - 569
Target Start/End: Complemental strand, 24177764 - 24177656
Alignment:
Q  461 ataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaattt 560  Q
    ||||||||||||||||| ||||||||||  ||| ||| |||||| |||| |||||| |||||||||| |||||||||||||| || | ||||||| |||     
T  24177764 ataaaccattatttacacttgaatagaagacaagcgggcaacaagctgcaccgctagacctttttggttggcaaaaccaatcctcgtgaacacaacattc 24177665  T
Q  561 atggaccta 569  Q
    |||||||||    
T  24177664 atggaccta 24177656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 457 - 553
Target Start/End: Complemental strand, 31737579 - 31737483
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacac 553  Q
    |||||||||| |||||||||| |||||||||| |||||| |||||||| ||||||||| |  |||||||||||||||||| ||||| || |||||||    
T  31737579 ttatataaacaattatttacacttgaatagaaggcaaacagacaacaagctgcgccgccaagcctttttggatggcaaaatcaatcctcgtaaacac 31737483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 45835441 - 45835331
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| |||||||||| | |||||| ||| ||||||||| |||| | ||||||||||||||||| ||||| || ||||||||| |    
T  45835441 tatataaaccattatttacacttgaatagaaaggaaacgggcaataaactgcgcagctaga-ctttttggatggcaaaatcaatcctcgtaaacacaaca 45835343  T
Q  558 tttatggaccta 569  Q
    || || ||||||    
T  45835342 ttcatagaccta 45835331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 460 - 542
Target Start/End: Original strand, 7213096 - 7213178
Alignment:
Q  460 tataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    |||||||||||||||||| |||||||||| |||| ||| ||||||  |||||||||| |||||||||||||| ||||||||||    
T  7213096 tataaaccattatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggtaaaaccaatc 7213178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 562
Target Start/End: Complemental strand, 20260041 - 20259949
Alignment:
Q  470 tatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttat 562  Q
    |||||||| ||||||||||  |||  || |||||||||||||||||| |||||||||||||||||||||||||   |||||||||| ||||||    
T  20260041 tatttacacttgaatagaagacaatggggcaacaaactgcgccgctagacctttttggatggcaaaaccaatccatataaacacaacatttat 20259949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 458 - 566
Target Start/End: Complemental strand, 28041383 - 28041275
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| || |||||||  ||| |||||||||| || |||||||| |||||||||||||| |||| ||||| |||| | ||||| |    
T  28041383 tatataaaccattatttacacttaaatagaagacaagcggacaacaagctccgccgctagacctttttggatggaaaaatcaatcctcatgagcacaaca 28041284  T
Q  558 tttatggac 566  Q
    || ||||||    
T  28041283 ttcatggac 28041275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 500 - 570
Target Start/End: Original strand, 2764372 - 2764442
Alignment:
Q  500 aacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacctaa 570  Q
    ||||| ||||||||||| |||||||||||||| |||| ||||| || ||||||||| ||||||||||||||    
T  2764372 aacaagctgcgccgctaaacctttttggatggtaaaatcaatcatcgtaaacacaacatttatggacctaa 2764442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 555
Target Start/End: Original strand, 2898556 - 2898650
Alignment:
Q  461 ataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||| ||||||||||||||||||||||  |||  ||| ||||| || ||||||||  |||||||||||||||||| ||||| || |||||||||    
T  2898556 ataaatcattatttacatttgaatagaagacaagtggataacaagctacgccgctaagcctttttggatggcaaaatcaatcctcttaaacacaa 2898650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 570
Target Start/End: Original strand, 5453968 - 5454058
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacctaa 570  Q
    ||||||| | |||| ||| |||||| ||||||||||| ||||||||||||| ||||||||||| |  ||||||||| ||| ||||||||||    
T  5453968 tgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaacattcatggacctaa 5454058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 34644458 - 34644528
Alignment:
Q  499 caacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    |||||||||||||||||| || |||||||||||||||| ||||| || ||||||||| ||| |||||||||    
T  34644458 caacaaactgcgccgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattcatggaccta 34644528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 563
Target Start/End: Complemental strand, 17078072 - 17077967
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||| | ||  |||| |  ||||||| |||||| |||||||| || || ||||| |||||||||||||||| |||| ||||||| |    
T  17078072 tatataaaccattatttatacttacatagcagacaaacgggcaacaatctgcgccgttagacttttttagatggcaaaaccaatcatcatgaacacaaca 17077973  T
Q  558 tttatg 563  Q
    ||||||    
T  17077972 tttatg 17077967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 501
Target Start/End: Complemental strand, 7151812 - 7151769
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaa 501  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  7151812 tatataaaccattatttacatttgaatagaaagcaaacggacaa 7151769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 4611040 - 4611151
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||  ||||||||| | ||||||| || |||| |||||||||| ||| || | || ||||||||||||| ||||| ||||| || | ||||||| |    
T  4611040 tatataagtcattatttatacttgaataaaaggcaagcggacaacaagctgtgctgttagacctttttggatgacaaaatcaatcatcgtgaacacaata 4611139  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  4611140 ttcatggaccta 4611151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 567
Target Start/End: Original strand, 30688430 - 30688517
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacc 567  Q
    ||||||||  |||| ||| |||||| |||||||||||  |||||||||||  ||||||||||| || ||||||||| ||| |||||||    
T  30688430 tgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacattcatggacc 30688517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 33225541 - 33225592
Alignment:
Q  316 gtccgatctaacaatttcgacatttttgccaattgaactaggaattatgaga 367  Q
    |||||| |||||||||||||||||||| |||||| |||||||| ||||||||    
T  33225541 gtccgacctaacaatttcgacatttttaccaattaaactaggacttatgaga 33225592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 43837130 - 43837079
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaactaggaattatgagacaaagtg 374  Q
    ||||||||| |||||||||||||| |||| |||||| |||||||||||||||    
T  43837130 ctaacaattccgacatttttgccagttgagctaggatttatgagacaaagtg 43837079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 541
Target Start/End: Original strand, 44270008 - 44270091
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaat 541  Q
    |||||||||||||||||||||||||||| ||  ||| ||| ||||||||||| ||  || |||||||| |||| ||||| ||||    
T  44270008 tatataaaccattatttacatttgaataaaagacaagcgggcaacaaactgcaccattagacctttttagatgacaaaatcaat 44270091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 8312564 - 8312661
Alignment:
Q  273 tcacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagacaa 370  Q
    |||||||||||| | ||| || |||||||| |  | || |||||| ||  ||||||||||||||||||||| |  ||||||||||| |||||||||||    
T  8312564 tcacacaaagtggaggtaccggggttcgaacctcgatcataacgttcggcctaacaatttcgacatttttgtccgttgaactaggacttatgagacaa 8312661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 499 - 556
Target Start/End: Original strand, 21934269 - 21934326
Alignment:
Q  499 caacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaa 556  Q
    |||||| |||||||||||  |||||||||||||||||||||||| || |||| |||||    
T  21934269 caacaagctgcgccgctaaccctttttggatggcaaaaccaatcctcttaaatacaaa 21934326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 236661 - 236566
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagaca 369  Q
    |||| |||||||| ||| || |||||||| || |||| | |||||||  ||||||||||||||||||||| || ||||  ||||| | ||||||||    
T  236661 cacataaagtgaaggtaccggggttcgaaccccggtcatgacgtccggcctaacaatttcgacatttttgtcagttgaggtaggactgatgagaca 236566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 369
Target Start/End: Original strand, 7204546 - 7204640
Alignment:
Q  275 acacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagaca 369  Q
    |||||||||| | |||||| |||||||| || |||| | | || ||  |||||||||||| ||||||||||| |||| |||||| ||||| ||||    
T  7204546 acacaaagtggaggtatcggggttcgaaccccggtcatgatgttcggcctaacaatttcggcatttttgccagttgagctaggacttatgggaca 7204640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 7483783 - 7483832
Alignment:
Q  506 ctgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||||||||||  ||||||| ||||||||||| ||||||| |||||||||    
T  7483783 ctgcgccgctaagcctttttagatggcaaaactaatcttcgtaaacacaa 7483832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 26763400 - 26763453
Alignment:
Q  293 gaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgcca 346  Q
    |||||||||| || |||| | |||||||| |||||||||||| |||||||||||    
T  26763400 gaggttcgaaccccggtcgtgacgtccgacctaacaatttcggcatttttgcca 26763453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 370
Target Start/End: Original strand, 11080998 - 11081094
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagacaa 370  Q
    |||| |||||| | |||||| |||| ||| || |||| |||||||||  ||| ||||||| |||||||||||| ||||  || || |||||||||||    
T  11080998 cacataaagtggaggtatcggggtttgaaccccggtcataacgtccggcctagcaatttcaacatttttgccagttgagttaagacttatgagacaa 11081094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 455 - 552
Target Start/End: Original strand, 18804461 - 18804558
Alignment:
Q  455 aattatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaaca 552  Q
    ||||||||||||||||||||||| |||||||||| |||| | | |||||| ||||||||||| ||||||||||||||||||||||||| || ||||||    
T  18804461 aattatataaaccattatttacacttgaatagaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaaca 18804558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 22589592 - 22589481
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||||| ||||||| || |||| ||| |||||| ||||||||||| ||||||||||||||||||||||||| || | ||||||| |    
T  22589592 tatataaaccattatttacacttgaataaaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaaca 22589493  T
Q  558 tttatggaccta 569  Q
    || || ||||||    
T  22589492 ttcatagaccta 22589481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 458 - 542
Target Start/End: Complemental strand, 18596855 - 18596771
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    |||||||||||||||||||| |||||||||| |||| | |||||||| ||||||||||| ||||||| |||||||||||||||||    
T  18596855 tatataaaccattatttacacttgaatagaaggcaagctgacaacaagctgcgccgctagaccttttcggatggcaaaaccaatc 18596771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 458 - 539
Target Start/End: Original strand, 15566130 - 15566211
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaacca 539  Q
    ||||||||  |||||||||||||||||||||||||| ||| |||||||||  ||||||| || |||||||||||||||||||    
T  15566130 tatataaattattatttacatttgaatagaatgcaagcgggcaacaaactatgccgctagacttttttggatggcaaaacca 15566211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 38815167 - 38815256
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||||| |||| ||| |||||| |||||||||||  ||||||||||||| |||||||||| || ||||||||| ||| |||||||||    
T  38815167 tgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggaccta 38815256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 555
Target Start/End: Complemental strand, 40223655 - 40223558
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||| ||||||||||||||||||||||||||  ||||| ||||| || |||||||  || || ||||| ||||||||||| |||| |||| |||||||    
T  40223655 tataaaaaccattatttacatttgaatagaagacaaacagacaataagctgcgccattagacattttttgatggcaaaactaatcatcatgaacacaa 40223558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 569
Target Start/End: Original strand, 24450972 - 24451082
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaa 556  Q
    ||||||||||||||||||||| ||||||||||   |||||||||| || ||||||||||| |   ||||||||||||||| ||||| || | |||||||     
T  24450972 ttatataaaccattatttacaattgaatagaagcaaaacggacaataagctgcgccgctaga-tattttggatggcaaaa-caatcatcgtgaacacaac 24451069  T
Q  557 atttatggaccta 569  Q
    ||| |||||||||    
T  24451070 attcatggaccta 24451082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 570
Target Start/End: Original strand, 39434559 - 39434630
Alignment:
Q  499 caacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacctaa 570  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||| || ||||||||| ||| ||||| ||||    
T  39434559 caacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggatctaa 39434630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 566
Target Start/End: Original strand, 500092 - 500201
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaa 556  Q
    ||||||||||||||||||||| |||||||||| |||| ||| ||| || ||| ||||  |  |||||||| |||| |||| ||||| || |||||||||     
T  500092 ttatataaaccattatttacacttgaatagaaggcaagcgggcaataagctgtgccgtcaagcctttttgaatggtaaaatcaatcctcgtaaacacaac 500191  T
Q  557 atttatggac 566  Q
    ||| ||||||    
T  500192 attcatggac 500201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 569
Target Start/End: Original strand, 24124880 - 24124990
Alignment:
Q  459 atataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaat 558  Q
    ||||||||||||||||||| |||||||||| |||| |||  || || ||||||||| |  | |||  |||||||||||| |||| |  ||||||||| ||    
T  24124880 atataaaccattatttacacttgaatagaaggcaagcggcaaaaaagctgcgccgccaagcttttacggatggcaaaactaatccttgtaaacacaacat 24124979  T
Q  559 ttatggaccta 569  Q
    | |||||||||    
T  24124980 tcatggaccta 24124990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 569
Target Start/End: Original strand, 3187881 - 3187932
Alignment:
Q  518 acctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||||||||||||||||||||  || ||||||||| ||| |||||||||    
T  3187881 acctttttggatggcaaaaccaattctcgtaaacacaacattcatggaccta 3187932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 1223592 - 1223530
Alignment:
Q  293 gaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaacta 355  Q
    |||||| |||||  |||| |||||||||| ||||||||||| ||||||||| || ||||||||    
T  1223592 gaggtttgaatctcggtcataacgtccgacctaacaatttcaacatttttgtcagttgaacta 1223530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 4699763 - 4699833
Alignment:
Q  499 caacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    |||||| ||||||| |||  ||||||||||||||||||| |||| |  ||||||||| ||| |||||||||    
T  4699763 caacaagctgcgccactaagcctttttggatggcaaaactaatccttgtaaacacaacattcatggaccta 4699833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 11021428 - 11021358
Alignment:
Q  274 cacacaaagtgaatgtatcgaggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgc 344  Q
    ||||||||||| | ||| || ||||||||  |||||| | |||||||| |||| |||||||||||||||||    
T  11021428 cacacaaagtggaggtaccggggttcgaactcaggtcatgacgtccgacctaataatttcgacatttttgc 11021358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 3673929 - 3673965
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaactaggaa 359  Q
    |||||||||||||||||||||||| |||| |||||||    
T  3673929 ctaacaatttcgacatttttgccagttgagctaggaa 3673965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 31941120 - 31941152
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaacta 355  Q
    |||||||||||| ||||||||||||||||||||    
T  31941120 ctaacaatttcggcatttttgccaattgaacta 31941152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 457 - 560
Target Start/End: Original strand, 5174 - 5277
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaa 556  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||  ||||| || | |||||||     
T  5174 ttatataaaccattatttacacttgaatagaatgcaagcgggcaacaagctgcgccgctagacctttttggatggcaaagtcaatcctcgtgaacacaac 5273  T
Q  557 attt 560  Q
    ||||    
T  5274 attt 5277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 15292281 - 15292170
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||||||||||||| | |||||||||| ||||  || |||||||||||||||| |  | |||||||||||||||| ||||| |||||||||||| |    
T  15292281 tatataaaccattatttatacttgaatagaaggcaagtgggcaacaaactgcgccgccaagcttttttggatggcaaaatcaatcctcataaacacaaca 15292182  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  15292181 ttcatggaccta 15292170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 458 - 555
Target Start/End: Original strand, 42921549 - 42921646
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||||||| ||||||||||| |||||||||| ||||  ||  ||||| ||||||||||| | ||||||||||||||||||||||| |  |||||||||    
T  42921549 tatataaatcattatttacacttgaatagaaggcaagtgggaaacaagctgcgccgctagatctttttggatggcaaaaccaatccttgtaaacacaa 42921646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 458 - 565
Target Start/End: Complemental strand, 2566351 - 2566244
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||| ||||||||||| ||||| | || ||||  || ||||||  |||||||||| ||||||||||||||||||| ||||| || ||||||||| |    
T  2566351 tatataaatcattatttacaattgaaaataaggcaagtgggcaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaaca 2566252  T
Q  558 tttatgga 565  Q
    || |||||    
T  2566251 ttgatgga 2566244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 570
Target Start/End: Original strand, 14423545 - 14423648
Alignment:
Q  461 ataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaattt 560  Q
    ||||||||||||||||| ||||||| || |||| ||||||||    ||| |||||| | ||||||||||||||||||||||| |  | |||||  |||||    
T  14423545 ataaaccattatttacacttgaataaaaggcaagcggacaac----tgcaccgctagatctttttggatggcaaaaccaatccttgtgaacac--aattt 14423638  T
Q  561 atggacctaa 570  Q
    ||||||||||    
T  14423639 atggacctaa 14423648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 555
Target Start/End: Original strand, 38875492 - 38875587
Alignment:
Q  456 attatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    |||||||||| ||||||||||| |||||||||| | |||| ||||| ||||||||||||   |||||||||||| ||  |||||||| || |||||||||    
T  38875492 attatataaatcattatttacacttgaatagaaggtaaacagacaataaactgcgccgc--aacctttttggatcgc--aaccaatcatcgtaaacacaa 38875587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 32270052 - 32269942
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    ||||||||  |||||||||| |||||||||| |||| |||  ||||| |||| ||||||  | |||||||||||| ||| ||||| || ||||||||| |    
T  32270052 tatataaaatattatttacacttgaatagaaggcaagcgggtaacaagctgc-ccgctatgcttttttggatggcgaaatcaatcctcgtaaacacaaca 32269954  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  32269953 ttcatggaccta 32269942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 42383130 - 42383173
Alignment:
Q  315 cgtccgatctaacaatttcgacatttttgccaattgaactagga 358  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  42383130 cgtccgacctaacaatttcggcatttttgccaattgaactagga 42383173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 499 - 536
Target Start/End: Complemental strand, 2917576 - 2917539
Alignment:
Q  499 caacaaactgcgccgctacacctttttggatggcaaaa 536  Q
    |||||||||||||||||| |||||||||||||||||||    
T  2917576 caacaaactgcgccgctagacctttttggatggcaaaa 2917539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 35310321 - 35310410
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| ||| |||||| ||||| || || |||| |||||||||||||||||||  || ||||||||| ||| |||||||||    
T  35310321 tgaataggaggcaagcgggcaacaagctgcgtcgttaaacctctttggatggcaaaaccaattctcgtaaacacaacattcatggaccta 35310410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 542
Target Start/End: Original strand, 11005761 - 11005813
Alignment:
Q  490 gcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    |||| ||| |||||| |||||||||||  ||||||||||||||||||||||||    
T  11005761 gcaagcgggcaacaagctgcgccgctaagcctttttggatggcaaaaccaatc 11005813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 566
Target Start/End: Complemental strand, 26212839 - 26212731
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    |||||||| ||||||||||| |||||||||| |||| ||| ||| | | |||| | ||| | ||||| ||| ||||||||||||| |||| || |||| |    
T  26212839 tatataaatcattatttacacttgaatagaaagcaagcgggcaatatattgcgtcactagatcttttcggaaggcaaaaccaatcctcatgaaaacaaca 26212740  T
Q  558 tttatggac 566  Q
    || ||||||    
T  26212739 ttcatggac 26212731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 972652 - 972715
Alignment:
Q  295 ggttcgaatccaggtcttaacgtccgatctaacaatttcgacatttttgccaattgaactagga 358  Q
    |||||||| || |||| || | ||||| ||||||||||||||||||||| || |||||||||||    
T  972652 ggttcgaaccctggtcatagcatccgacctaacaatttcgacatttttgtcagttgaactagga 972715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 23023478 - 23023557
Alignment:
Q  490 gcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    |||||||||||| ||  |||||| |||  |||||||||||| ||||| |||||||| ||||||||| ||| || ||||||    
T  23023478 gcaaacggacaataagatgcgcccctaggcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgaccta 23023557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 42436399 - 42436352
Alignment:
Q  295 ggttcgaatccaggtcttaacgtccgatctaacaatttcgacattttt 342  Q
    |||||||||||  ||| |||| ||||||||||||||||||||||||||    
T  42436399 ggttcgaatccccgtcataacatccgatctaacaatttcgacattttt 42436352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 430475 - 430564
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| | ||| |||| |||| ||| || |||||||||||||||| || ||||| || ||||||||| ||| |||||||||    
T  430475 tgaataggaggcaagcagacnacaagctgcaccgatagacctttttggatggcataatcaatcctcgtaaacacaacattcatggaccta 430564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 9599353 - 9599311
Alignment:
Q  324 taacaatttcgacatttttgccaattgaactaggaattatgag 366  Q
    |||||||||||||||||||| || |||| ||||||||||||||    
T  9599353 taacaatttcgacatttttgtcagttgagctaggaattatgag 9599311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 361
Target Start/End: Original strand, 15067226 - 15067264
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaactaggaatt 361  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  15067226 ctaacaatttcgacattttttccaattgagctaggaatt 15067264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 14570529 - 14570562
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaactag 356  Q
    ||||||||||| ||||||||||||||||||||||    
T  14570529 ctaacaatttcaacatttttgccaattgaactag 14570562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 541
Target Start/End: Original strand, 7143575 - 7143643
Alignment:
Q  473 ttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaat 541  Q
    |||||||||| ||||| |||||||  ||| ||||||||||||||  |||||||  ||||||||| ||||    
T  7143575 ttacatttgagtagaaggcaaacgagcaataaactgcgccgctaagcctttttaaatggcaaaatcaat 7143643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 11408424 - 11408368
Alignment:
Q  314 acgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagacaa 370  Q
    |||| |||||||||||||| ||||||||||| | |||| |||||| ||||| |||||    
T  11408424 acgttcgatctaacaattttgacatttttgctagttgagctaggacttatgggacaa 11408368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 22792187 - 22792231
Alignment:
Q  314 acgtccgatctaacaatttcgacatttttgccaattgaactagga 358  Q
    |||||||| |||||||||||| ||||||||||| |||| ||||||    
T  22792187 acgtccgacctaacaatttcggcatttttgccagttgagctagga 22792231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 469 - 555
Target Start/End: Original strand, 6750 - 6836
Alignment:
Q  469 ttatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||||||| |||||||||| |||| ||| |||||| ||||| ||||| ||||||||||||||||||||||||  || |||||||||    
T  6750 ttatttacacttgaatagaaggcaagcgggcaacaagctgcggcgctagacctttttggatggcaaaaccaattctcgtaaacacaa 6836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 480 - 555
Target Start/End: Complemental strand, 17249539 - 17249464
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaa 555  Q
    ||||||| | |||| ||| |||||| ||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  17249539 tgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaa 17249464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 458 - 512
Target Start/End: Complemental strand, 34562433 - 34562379
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgcc 512  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  34562433 tatataaactattatttacacttgaatagaaggcaaacggacaacaaactgcgcc 34562379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 567
Target Start/End: Original strand, 7749354 - 7749441
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggacc 567  Q
    ||||||| | |||| ||| |||||| |||| |||||| ||||||| ||||||||||||||||| || ||||||||| ||| |||||||    
T  7749354 tgaataggaggcaagcgggcaacaagctgcaccgctagaccttttaggatggcaaaaccaatcctcgtaaacacaacattcatggacc 7749441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 569
Target Start/End: Original strand, 28625786 - 28625893
Alignment:
Q  462 taaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaattta 561  Q
    ||||| |||||||||| || ||||||| ||||||||  || || ||||||||||| | ||||||| ||||||||| |||||| | ||||||||| ||| |    
T  28625786 taaactattatttacacttaaatagaaggcaaacgggtaataagctgcgccgctagatctttttgaatggcaaaatcaatctccgtaaacacaacattca 28625885  T
Q  562 tggaccta 569  Q
    | ||||||    
T  28625886 tagaccta 28625893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 569
Target Start/End: Complemental strand, 3137481 - 3137392
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||| ||| |||||||| ||||||  ||| | ||||  |||||||||||||||||||||||| || ||||||||| ||| |||||||||    
T  3137481 tgaatggaaggcaaacgggcaacaagttgcactgctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggaccta 3137392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 569
Target Start/End: Complemental strand, 33220945 - 33220856
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||| | |||| ||| |||||| ||||||||||| ||||||| ||||||||||||||||  || ||||| ||| ||| |||||||||    
T  33220945 tgaataggaggcaagcggccaacaagctgcgccgctagaccttttaggatggcaaaaccaattatcgtaaacgcaacattcatggaccta 33220856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 32115569 - 32115680
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaa 557  Q
    ||||||||||| |||||| | ||||||||||  |||||  |||||||  | | |||||| |||||||| ||| |||||| ||||| || ||||||||| |    
T  32115569 tatataaaccaatatttatacttgaatagaagacaaacaaacaacaagttccaccgctagacctttttagatagcaaaatcaatcatcgtaaacacaaca 32115668  T
Q  558 tttatggaccta 569  Q
    || |||||||||    
T  32115669 ttcatggaccta 32115680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 45877 - 45819
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgcta 516  Q
    |||||||||||||||||||| |||||||| | |||| ||| |||||| |||||||||||    
T  45877 tatataaaccattatttacacttgaataggaggcaagcgggcaacaagctgcgccgcta 45819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 28533483 - 28533442
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaactaggaattatg 364  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  28533483 ctaacaatttcggcatttttgccaattgaactaggacttatg 28533442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 569
Target Start/End: Original strand, 28543270 - 28543359
Alignment:
Q  480 tgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacacaaaatttatggaccta 569  Q
    ||||||||| |||| |||||||  |  |||||||||| | |||||  |||||||||||||||| || |||||| || |||||||||||||    
T  28543270 tgaatagaaggcaagcggacaattagttgcgccgctagatcttttcagatggcaaaaccaatcctcttaaacataatatttatggaccta 28543359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 26225773 - 26225735
Alignment:
Q  520 ctttttggatggcaaaaccaatcttcataaacacaaaat 558  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  26225773 ctttttggatgacaaaaccaatcctcataaacacaaaat 26225735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 2135058 - 2135002
Alignment:
Q  460 tataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgcta 516  Q
    |||||||||||||||||| |||||||||| |||| | |  ||||| |||||||||||    
T  2135058 tataaaccattatttacaattgaatagaaggcaagcaggtaacaagctgcgccgcta 2135002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 9297799 - 9297755
Alignment:
Q  323 ctaacaatttcgacatttttgccaattgaactaggaattatgaga 367  Q
    ||||||||||||||||||||| || ||||||||||| || |||||    
T  9297799 ctaacaatttcgacatttttgtcagttgaactaggacttgtgaga 9297755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 542
Target Start/End: Original strand, 34168772 - 34168856
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatc 542  Q
    ||||||||  |||| |||||  ||||||||| |||| ||| | ||||  ||||||||||  ||||||||||| ||||||||||||    
T  34168772 tatataaatgattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatc 34168856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 541
Target Start/End: Complemental strand, 16901 - 16827
Alignment:
Q  467 cattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaat 541  Q
    |||||||||||||||||| ||| ||||| || |||||  |||| |||||| ||||||||||||||||||| ||||    
T  16901 cattatttacatttgaatggaaggcaaaagggcaacatgctgcaccgctagacctttttggatggcaaaatcaat 16827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 553
Target Start/End: Original strand, 33101 - 33196
Alignment:
Q  458 tatataaaccattatttacatttgaatagaatgcaaacggacaacaaactgcgccgctacacctttttggatggcaaaaccaatcttcataaacac 553  Q
    |||||| ||||||||||||| |||||||||| |||| | | |||||| |||| |||| |  |||||||||||| ||||| ||||| || |||||||    
T  33101 tatatacaccattatttacacttgaatagaaggcaagcaggcaacaagctgcaccgccaagcctttttggatgacaaaatcaatcctcgtaaacac 33196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 500
Target Start/End: Original strand, 13309 - 13352
Alignment:
Q  457 ttatataaaccattatttacatttgaatagaatgcaaacggaca 500  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  13309 ttatataaaccattatttacatttgaatagaaagcaagcggaca 13352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 19390 - 19444
Alignment:
Q  314 acgtccgatctaacaatttcgacatttttgccaattgaactaggaattatgagac 368  Q
    |||||||  ||||||||||| |||||||||||| ||||||||||| |||||||||    
T  19390 acgtccggcctaacaatttcaacatttttgccagttgaactaggacttatgagac 19444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 568
Target Start/End: Complemental strand, 52711 - 52663
Alignment:
Q  520 ctttttggatggcaaaaccaatcttcataaacacaaaatttatggacct 568  Q
    ||||||||||  |||||| ||||||||||||||||| ||| ||||||||    
T  52711 ctttttggataacaaaactaatcttcataaacacaatattcatggacct 52663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 396221 - 396253
Alignment:
Q  319 cgatctaacaatttcgacatttttgccaattga 351  Q
    |||||||||||||||||||||||| ||||||||    
T  396221 cgatctaacaatttcgacatttttaccaattga 396253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University