View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5795-Insertion-8 (Length: 365)

Name: NF5795-Insertion-8
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5795-Insertion-8
NF5795-Insertion-8
[»] chr5 (1 HSPs)
chr5 (9-365)||(4947724-4948104)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 4948104 - 4947724
Alignment:
Q  9 gtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4948104 gtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatat 4948005  T
Q  109 tcaggtttaacttatctaggttaagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagtagaacatta---------- 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  4948004 tcaggtttaacttatctaggttaagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagtagaacattactcacaaaca 4947905  T
Q  199 ---ctcacaactataaaatttaaattatnnnnnnnnttagatacc-----------taatttgatcatagaaaatgatcaataaaaacaatttttagttt 284  Q
       |||||||||||||||||||||||||        || ||| ||           ||||||||||||||||||||||||||||||||||||||||||||    
T  4947904 ttactcacaactataaaatttaaattataaattttttttgatcccgagttgatccctaatttgatcatagaaaatgatcaataaaaacaatttttagttt 4947805  T
Q  285 ctgagtaaagaaaatggaacaatttaatcccgagnnnnnnnatgtctactctttgggtccgagaaataaaagctgtcctat 365  Q
    ||||| ||||||||||||||||||||||||| ||       ||||||| ||||||||||||||||||||||||||||||||    
T  4947804 ctgagaaaagaaaatggaacaatttaatccctagtttttttatgtctattctttgggtccgagaaataaaagctgtcctat 4947724  T

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