View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5795-Insertion-9 (Length: 360)
Name: NF5795-Insertion-9
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5795-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 48289797 - 48289431
Alignment:
| Q |
8 |
agaaccgacccattgttatattggaatgatacgatagacccctccaaattgatcacttaactataaaaagttaatgggg-agttacgacccaatcaaaat |
106 |
Q |
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| T |
48289797 |
agaaccgacccattgttatattggaatgatacgatagacccctccaaattgatcacttaactataaaaagttgatgggggagttacgacccaatcaaaat |
48289698 |
T |
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| Q |
107 |
ttaaaacacaaaaacatctaattgggagttatgatacaatttggattgaaattgagctgatgactatagcgactcatgaagcagaagaagataacacttg |
206 |
Q |
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| T |
48289697 |
ttaaaacacaaaaacatctaattgggagttatgatacaatttggattgaaattgagctgatgac-atagcgactcatgaagaagaagaggatagcactt- |
48289600 |
T |
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| Q |
207 |
gggtgatattacaatgtcacaatcgttatgaaaaagagaagnnnnnnnnncccac--------ttgtgattgatcgatgtcatcaattttatgtcaccag |
298 |
Q |
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| T |
48289599 |
gggtgatatcataatgtcacaatccttatgaaaaagagaagaaaaaaaaa-caacttttgatattgtgattaatcgatgtcataaattttatgtcaccag |
48289501 |
T |
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| Q |
299 |
agtgctacccggagaagagtctaag--------catgcagggcccacgccaccctgaatgacttccatcc |
360 |
Q |
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| T |
48289500 |
agtgctacccggagaagagtctaagcatgcagccatgcaggccccacgccaccctgaatgacttccatcc |
48289431 |
T |
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