View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5795_high_3 (Length: 221)
Name: NF5795_high_3
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5795_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 2154837 - 2154619
Alignment:
| Q |
3 |
tgaagtccaggtccaagcccacacccaagaccacgcccaaccacctgagaacgagaagaatcttccatcattgcaggctgattttccatgctcggtttcg |
102 |
Q |
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| T |
2154837 |
tgaagtccaggtccaagcccaaacccaagaccaggcccaaccacctgagaacgagaagaatcttccatcattgcaggctgattttccatgctcggtttcg |
2154738 |
T |
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| Q |
103 |
ccgtacgtttctcatctgaaatccgatactcgcctgaaggagattgtgtttcaaactacgccggaggttgaattaaaatcatccgccgtaaacgacggag |
202 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2154737 |
ccgtacgtttctcacctgaaatccgatactcgcctgaaggagattgtgtttcaaactacgccggaggttgaattaaaatcatccgccgtaaacgacggag |
2154638 |
T |
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| Q |
203 |
gaagtggatctgagaaacg |
221 |
Q |
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||||||||||||||||||| |
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| T |
2154637 |
gaagtggatctgagaaacg |
2154619 |
T |
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