View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5795_low_1 (Length: 608)
Name: NF5795_low_1
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5795_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 477 - 579
Target Start/End: Complemental strand, 24942119 - 24942017
Alignment:
| Q |
477 |
gcaacatgtaactaatagaacaacatatgtcaatatgctcatatgcgtttttgaagtaactttcctctaaaactcacatagtgactcatccaagtctcta |
576 |
Q |
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| T |
24942119 |
gcaacatgtaactaatagaacaacatatatcaatatgctcatatgcgttttggaagtaactttcctctaaaactcacatagtgacacatccaagtctcta |
24942020 |
T |
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| Q |
577 |
tac |
579 |
Q |
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||| |
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| T |
24942019 |
tac |
24942017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 20515595 - 20515628
Alignment:
| Q |
279 |
agaagttgaatgattgaagatgcttccagagatg |
312 |
Q |
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| T |
20515595 |
agaagttgaatgattgaagatgcttccagagatg |
20515628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 11299382 - 11299456
Alignment:
| Q |
347 |
atggaggttttggttgagaggaatgaaaggatgtggcagagtatagagtctggtaaggtgcttattctgtcaatg |
421 |
Q |
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| T |
11299382 |
atggtggttttggttgggaggaaggagaagatgtggcagagtacagagtctggtagattgcttagtctgtcaatg |
11299456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 411
Target Start/End: Original strand, 35189933 - 35190036
Alignment:
| Q |
308 |
agatggcgccagcggcgagaaacgagagagattgttgatatggaggttttggttgagaggaatgaaaggatgtggcagagtatagagtctggtaaggtgc |
407 |
Q |
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| T |
35189933 |
agatggcgccaacggcgagagacgagagggattgttgtgacggtgattttggttgggaggaaggagagtatatggcagaggagtgagtctggtagggtgt |
35190032 |
T |
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| Q |
408 |
ttat |
411 |
Q |
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|||| |
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| T |
35190033 |
ttat |
35190036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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