View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5795_low_2 (Length: 450)
Name: NF5795_low_2
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5795_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 38929724 - 38929303
Alignment:
| Q |
18 |
gaagacaccttcgaagttcgaccctttaatttttaggggaataatgacactaataattcagattgagtttggtttcaagataaataaagttttgcaaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38929724 |
gaagacaccttcgaagttcgaccctttaatttttaggggaataatgacactaataattcagattgagtttggtttcaagataaataaagttttgcaaata |
38929625 |
T |
|
| Q |
118 |
tataattggtctattaaatatttgatttgatcaaactcactacannnnnnnnngaatgaagactctcaaaaaattcatacatctttcttcnnnnnnnnnn |
217 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38929624 |
tataattggtctcttaaatatttgacttgatcaaactcactacatttttttt--aatgaagactctcaaaaaattcatacatctttcttcaaaaaaaata |
38929527 |
T |
|
| Q |
218 |
nnnnnnnn--ctcatccatctttaagtcatttgagtttattcatttagttacatgttattttaactcattaagtatatacttagtataacattaaatata |
315 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38929526 |
aaataaaaaactcatacatctctaagtcatttgagtttatttatttagttacatgttattttaactcattaagtgtatacttagtataacattaaatata |
38929427 |
T |
|
| Q |
316 |
tcagaatcacgataatacaccataattttgtagaaattacaaactgtaataccaaacataggccgattgagttgaaataattaggaatcgatgaaaagtg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38929426 |
tcagaatcacgataatacaccataattttgtagaaattacaaactgtaataccaaacataggctgattgagttgaaataattaggaatcgatgaaaagtg |
38929327 |
T |
|
| Q |
416 |
taaattacttcatgcttccccttt |
439 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38929326 |
taaattacttcatgcttccccttt |
38929303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University