View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797-Insertion-1 (Length: 1080)
Name: NF5797-Insertion-1
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 393 - 888
Target Start/End: Original strand, 3566418 - 3566917
Alignment:
| Q |
393 |
aaccttggatggattttgaacaattccctgaaagatggataactagtttacagcttaaaatgtttgccttgaacaatagacctaataggctctctaatat |
492 |
Q |
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| T |
3566418 |
aaccttggatggattttgaacaattccctgaaagatggataactagtttacagcttaaaatgtttgccttgaacaatagacctgataggctctctaatat |
3566517 |
T |
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| Q |
493 |
ctagtatttttgtaaaatctccatgaaccttgttattcttactcttgatgagcaacatgtttccttctcaattgttgatggacaccaaacttttgttata |
592 |
Q |
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| T |
3566518 |
ctagtgtttttgtaaaatctccatgaaccttgttattcttattcttgatgagcaacatgtttccttctcaattgttgatggacaccaaacttttgttata |
3566617 |
T |
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| Q |
593 |
tctgttgtgtatgcttccacagattacagaaaaagaagacaattatggaa-nnnnnnnatctcttttgcaatctcaatatgccttcccatggtgcttcat |
691 |
Q |
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| T |
3566618 |
tctgttgtgtatgcttccacagattacagaaaaagaagacaattatggaattttttttatctcttttgcaatctcaatatgccttcccatggtgcttcat |
3566717 |
T |
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| Q |
692 |
atgtgattttaactctattattggagctcatgagcataggtgaagaatcactcctacgaggtcacctatggaagagtttaagtcttggatcgacagaaat |
791 |
Q |
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| T |
3566718 |
atgtgattttaactctattattggagctcatgagcataggtgaagaatcactcctaccaggtcacctatggaagagtttaagtcttgtatcgacagaaat |
3566817 |
T |
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| Q |
792 |
gctttagttcatttgcctgccaatggtgttgaatacacttgggccaatggtaagggaatc-atataagcacataaagaag--ttgatagagacatcacta |
888 |
Q |
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| T |
3566818 |
gctttagttcatttgcctgccaatggtgttgaatacacttgagccaatggtaagggaatcaatataagcacataaagaaggttggatagagacatcacta |
3566917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 3566065 - 3566424
Alignment:
| Q |
15 |
agattacacaacctttgtccactcctgacatagtccagaaggatatagactttcttaaaaactcatgggccaacattgtggaaaataaagatgcagatac |
114 |
Q |
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| T |
3566065 |
agattacacaacctttgtccactcctgacatagtccagaaggatatagactttcttaaaaactcatgggccaacattgtggaaaataaagatgcagatac |
3566164 |
T |
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| Q |
115 |
acgttttttacaaaccttagaaaagttcctgaagcaaacaccttacaagtcattgatagtgatggttttcagatgaaagtatcaaaacaccaaaagaaag |
214 |
Q |
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| T |
3566165 |
acgttttttacaaaccttagaaaagttcctgtagcaaacaccttacaagtcattgatagtgatggttttcatatgaaagtatcaaaacaccaaaagaaag |
3566264 |
T |
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| Q |
215 |
ctcagaagaagctcagtcacacaggaatagaagttattacaaccagatcaaaggttataagacacctttcaaatgaagtatatatattggaatgtaatag |
314 |
Q |
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| T |
3566265 |
ctcagaagaagctcagtcacacaggaatagaagttattacaaccagatcaaaggttataagacacctttcaaatgaagtacatatattggaatgtaatag |
3566364 |
T |
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| Q |
315 |
gcctagctaatcccccatcaagattagctttacaaatacttatttctcttcataaccttg |
374 |
Q |
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| T |
3566365 |
gcctagctaatccctcatcaagattagctttacaaatacttatttctcttcataaccttg |
3566424 |
T |
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