View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797-Insertion-10 (Length: 473)
Name: NF5797-Insertion-10
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797-Insertion-10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 136 - 473
Target Start/End: Complemental strand, 23287234 - 23286897
Alignment:
| Q |
136 |
tggaaacctacaatttgaagcctaacattggtcaagatgaaaagtcaaaggtaaacaaaccttaaacaagcaatgatcaagctgttgttgaacctcagca |
235 |
Q |
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| T |
23287234 |
tggaaacctacaatttgaagcctaacattggtcaagatgaaaagtcaaaggtaaacaaaccttaaacaagcaatgatcaagctgttgttgaacctcagca |
23287135 |
T |
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| Q |
236 |
aaagcagaacgaacccttcttctagaatatgcaaaatcaaggttataagaagctatatcattcaactcttcactcacaccatcaattggtgcttttctct |
335 |
Q |
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| T |
23287134 |
aaagcagaacgaacccttcttctagaatatgcaaaatcaaggttataagaagctatatcattcaactcttcacttacaccatcaattggtgcttttctct |
23287035 |
T |
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| Q |
336 |
ttgctgtcactgttaacttgattttcttgggtctaatattgagttttgttgtaaagggtaattgattcttcaaagggttgttgtatatgggagagaaagg |
435 |
Q |
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| T |
23287034 |
ttgctgtcactgttaacttgattttcttgggtctattgttgagttttgttctaaaggatagatgattcttcaaagggttgttgtatatgggagagaaagg |
23286935 |
T |
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| Q |
436 |
tatgaaggatgtgaggttctttgattggaatctgaatg |
473 |
Q |
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| T |
23286934 |
tatgaaggatgtgaggttctttgattggaatctgaatg |
23286897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 23287354 - 23287259
Alignment:
| Q |
16 |
gtgtcagtgtcggacacggtacgtgtctgacctcatcc-tcatgccttatccgaggagtatatgtgcttcaaagctacaaactaacatttacatat |
110 |
Q |
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| T |
23287354 |
gtgtcagtgtcggacactgtacgcgtctgacctcatccctcatgccttatccgaggagtatatgtgcttcaaagctacaaactaacatttacatat |
23287259 |
T |
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