View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797-Insertion-13 (Length: 431)
Name: NF5797-Insertion-13
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797-Insertion-13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Complemental strand, 30054963 - 30054524
Alignment:
| Q |
9 |
ctattcacgttcgtattggagtatttaacaaagtatacttccccaactctcttaatttgcctgctttaaccaccttggctgtaaggttcttccactttcg |
108 |
Q |
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| T |
30054963 |
ctattcacgttcgtattgtagtatttaacaaagtatacttccccaactctcttaatttgcctgctttaaccaccttggctgtaaggttcttccactttcg |
30054864 |
T |
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| Q |
109 |
cgctggcgatgatggttgaatactttggtcattgaaagttttatacttgtggaggatgcagaaactctttgtatatcaagtgacacacttgtcaatttga |
208 |
Q |
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| T |
30054863 |
cgctggcgatgatggttgaatactttggtcattgaaagttttagacttgtggaggatgtagaaactctttgtatatcaagtgacacacttgtcaatttga |
30054764 |
T |
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| Q |
209 |
ctat------gtatggat---------atgctagtttgatgtgcaacatatctgctcatttgctttccaacttttcttttattggatctctcaaccaaaa |
293 |
Q |
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| T |
30054763 |
ctatatatgggtatggatttgataccaatgctagtttgattggcaacatatctgctcatttgctttccaacttttcttttattggatctctcaaccaaaa |
30054664 |
T |
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| Q |
294 |
accatgccatatccatctttgttctgttaaacacgtttacaaggatgcagacatcggattc---aatcgcccgttggaagatgaatctgcagtcctactc |
390 |
Q |
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| T |
30054663 |
accatgccatatccatctttgttctgttaaacatgtttacatggatgcagacatcggattcattaatcgccccttggaagacgaatctgcagtcctactc |
30054564 |
T |
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| Q |
391 |
aactggctactactagttttctaatatcaaatcattgactg |
431 |
Q |
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| T |
30054563 |
aactggctactac-agttttctaatatcaaatcattgactg |
30054524 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 45906437 - 45906383
Alignment:
| Q |
162 |
ggatgcagaaactctttgtatatcaagtgacacacttgtcaatttgactatgtat |
216 |
Q |
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||||||| |||| ||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
45906437 |
ggatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatgtat |
45906383 |
T |
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