View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5797-Insertion-18 (Length: 205)

Name: NF5797-Insertion-18
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5797-Insertion-18
NF5797-Insertion-18
[»] chr4 (4 HSPs)
chr4 (9-203)||(47105217-47105411)
chr4 (105-170)||(35851271-35851336)
chr4 (105-200)||(43077265-43077359)
chr4 (103-201)||(16501997-16502096)
[»] chr6 (2 HSPs)
chr6 (104-203)||(26534417-26534514)
chr6 (110-200)||(6946858-6946948)
[»] chr3 (4 HSPs)
chr3 (104-197)||(33753629-33753721)
chr3 (134-182)||(22948432-22948480)
chr3 (118-197)||(22948318-22948397)
chr3 (104-188)||(38489083-38489168)
[»] chr2 (2 HSPs)
chr2 (104-179)||(29043993-29044067)
chr2 (72-102)||(10176567-10176597)
[»] chr7 (2 HSPs)
chr7 (109-180)||(27028464-27028535)
chr7 (104-182)||(9350010-9350087)
[»] chr8 (2 HSPs)
chr8 (104-197)||(30235808-30235900)
chr8 (72-102)||(39901582-39901612)
[»] chr1 (1 HSPs)
chr1 (136-178)||(29938945-29938987)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 47105411 - 47105217
Alignment:
Q  9 aatgaaagattggagaaacacacaggacagacgggaaaagatgatattttaagggnnnnnnnnagattacctttaaagaatggtgggtaacttaggggtg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| |||||||||||||||||||| |||||| |     
T  47105411 aatgaaagattggagaaacacacaggacagacgggaaaagatgatattttaagggttttttttagattatctttaaagaatggtgggtaatttagggata 47105312  T
Q  109 atgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttcatc 203  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  47105311 atgtccttttgggtgttgattgtaggggtgtctttattgatgttttgtttataggtgttccgcttatatacggcaccttttgtttgtacttcatc 47105217  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 35851271 - 35851336
Alignment:
Q  105 ggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccg 170  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||| || ||||||||    
T  35851271 ggtgatgtccttttgggtgttgatcgcaggggtgtctttattgatgttttgtttttatgtgttccg 35851336  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 43077265 - 43077359
Alignment:
Q  105 ggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttc 200  Q
    ||||||||||||||| |||||||| | |||||||||||| |||||| ||| |||  |||||||| || |||||||| |  |||| |||||||||||    
T  43077265 ggtgatgtccttttgagtgttgatcgcaggggtgtctttgttggtg-tttattttcaggtgttctgcctatatacgacgtattttgtttgtacttc 43077359  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 16501997 - 16502096
Alignment:
Q  103 ggggtgatgtccttttgggtgttgattgtaggggtgtctttattggtg-ttttgtttataggtgttccgcttatatacggcacatttagtttgtacttca 201  Q
    |||||| ||||||||||| ||||| ||| | |||||||||| |||| | |||||| |  ||||||||||| ||||||| || | ||| ||||||||||||    
T  16501997 ggggtggtgtccttttggatgttgtttgcaagggtgtctttgttggagtttttgtattcaggtgttccgcctatatacagcgccttttgtttgtacttca 16502096  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 26534514 - 26534417
Alignment:
Q  104 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttcatc 203  Q
    |||||||||||||||||||||| |||| |||||||||||| |||  || ||||||  ||||||||||| |||||||| | | ||| ||||||||||||||    
T  26534514 gggtgatgtccttttgggtgtttattgcaggggtgtctttgttg--gtattgttttcaggtgttccgcctatatacgacgccttttgtttgtacttcatc 26534417  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 6946948 - 6946858
Alignment:
Q  110 tgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttc 200  Q
    ||||||| ||||||||||| | | |||||||||| ||||||||||||||    |||||||   |||||||||| | ||| |||||||||||    
T  6946948 tgtccttatgggtgttgatcgcaagggtgtctttgttggtgttttgttttcgagtgttccatctatatacggcgccttttgtttgtacttc 6946858  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 33753629 - 33753721
Alignment:
Q  104 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtac 197  Q
    ||||||||||||||||||||||||| | |||| ||||| |||||||||||| ||| ||||||||| |  |||||||||||  ||| ||||||||    
T  33753629 gggtgatgtccttttgggtgttgatcgcaggg-tgtctctattggtgttttatttttaggtgttctgtctatatacggcatcttttgtttgtac 33753721  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 22948480 - 22948432
Alignment:
Q  134 gggtgtctttattggtgttttgtttataggtgttccgcttatatacggc 182  Q
    |||||||||| ||||||||||||||  ||||||||||| ||||||||||    
T  22948480 gggtgtctttgttggtgttttgttttcaggtgttccgcatatatacggc 22948432  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 22948397 - 22948318
Alignment:
Q  118 tgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtac 197  Q
    ||||||||||| | | |||||||||| ||||||||||||||  |||||||| ||||||| | ||||| ||| | ||||||    
T  22948397 tgggtgttgatcgcatgggtgtctttgttggtgttttgttttcaggtgttctgcttataaatggcaccttttggttgtac 22948318  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 38489083 - 38489168
Alignment:
Q  104 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgtttt-gtttataggtgttccgcttatatacggcacattt 188  Q
    ||||| ||| ||||||||||||||| | | || ||||||| ||||  |||| ||||| ||||||||||| ||||||||||| ||||    
T  38489083 gggtgttgttcttttgggtgttgatcgcatggatgtctttgttgggattttcgtttacaggtgttccgcctatatacggcatattt 38489168  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 29044067 - 29043993
Alignment:
Q  104 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatac 179  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||||| ||||||||  ||||||||||| |||||||    
T  29044067 gggtgatgtacttttgggtgttgatcgcaggggtgtctttgttggt-ttttgttttcaggtgttccgcctatatac 29043993  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 10176567 - 10176597
Alignment:
Q  72 agattacctttaaagaatggtgggtaactta 102  Q
    |||||||||||||||||||||||||||||||    
T  10176567 agattacctttaaagaatggtgggtaactta 10176597  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 27028464 - 27028535
Alignment:
Q  109 atgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacg 180  Q
    |||||||||||||||||||| | | || |||||||||  ||||||||||| |||||||||| | ||||||||    
T  27028464 atgtccttttgggtgttgatcgcatggatgtctttatcagtgttttgtttttaggtgttccacctatatacg 27028535  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 9350010 - 9350087
Alignment:
Q  104 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggc 182  Q
    ||||| ||||||| |||| |||||||| |||||||||||| |||||| ||| |||  ||||||||||| ||||||||||    
T  9350010 gggtgttgtccttatgggggttgattgcaggggtgtctttgttggtgattt-tttccaggtgttccgcctatatacggc 9350087  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 30235900 - 30235808
Alignment:
Q  104 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtac 197  Q
    ||||| ||||||||||||||||||| | | |||||||||| |||||| |||||||   | |||||||| |||||||||  | ||||||||||||    
T  30235900 gggtgttgtccttttgggtgttgatcgcaagggtgtctttgttggtg-tttgttttcggatgttccgcctatatacggagcctttagtttgtac 30235808  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 39901582 - 39901612
Alignment:
Q  72 agattacctttaaagaatggtgggtaactta 102  Q
    |||||||||||||||||||||||||||||||    
T  39901582 agattacctttaaagaatggtgggtaactta 39901612  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 29938987 - 29938945
Alignment:
Q  136 gtgtctttattggtgttttgtttataggtgttccgcttatata 178  Q
    |||||||| |||||||||||||| |||||||||||| ||||||    
T  29938987 gtgtctttgttggtgttttgtttttaggtgttccgcctatata 29938945  T

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