View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797-Insertion-3 (Length: 995)
Name: NF5797-Insertion-3
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 13 - 424
Target Start/End: Original strand, 23537859 - 23538270
Alignment:
| Q |
13 |
ggaggtaatgatttgaataacaataggcttgagcattattactacactatcgctgcactcggagtcttgaatctgttgtatttcatgttctttgctcgtc |
112 |
Q |
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| T |
23537859 |
ggaggtaatgatttgaataagaataggcttgaccattattactacactatcgctgcattcggagtcttgaatctgttgtatttcgtgttctttgctcgtc |
23537958 |
T |
|
| Q |
113 |
ggtttttgaatagtgaggtgctacaaagacagactcaaagtgaagaaagggatttagaacatgagaatcatcaatagttgctgaattccatggtccagag |
212 |
Q |
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| T |
23537959 |
gatttttgaatagtgaggtgctacaaagacagattcaaagtgaagaaagggatttagaacatgagaatcatcaatagtagctgaaatccatagtccagag |
23538058 |
T |
|
| Q |
213 |
gcatgtcctagaagtaaaagtatgtatgaagaataaatgtttagaaaaatgagaatcatatgtatggatattatttcctcctcctgtaactcatctcatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23538059 |
acatgtcctagaagtaaaagtatgtatgaagaataaatgtttagaaaaatgagaatcatatgtatggatattatttcctcctcctgtaactcatctcact |
23538158 |
T |
|
| Q |
313 |
caaggaaatagaataaatct-----tatgaataaatgtttaagcctagagagtaatttgtatggtagaagaagagttacgttacacatttaaccaatttc |
407 |
Q |
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| T |
23538159 |
caaggaaatagaataaatcttaaaatatgaacaaatgtttaagcctagagagtaatttttatggtagaagaaga-----gttacacatttaaccaatttc |
23538253 |
T |
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| Q |
408 |
aagagcattaatttata |
424 |
Q |
| |
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|| |||||| ||||||| |
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| T |
23538254 |
aaaagcattgatttata |
23538270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 713 - 906
Target Start/End: Original strand, 23538490 - 23538691
Alignment:
| Q |
713 |
tatattgtagttaacattcaaaataaaaggaagtaagataacaaaaagctaaccttagatcattttgtcgttcaatgttcgactga----gtaaccatat |
808 |
Q |
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|||||||||||||||| ||||||||||||||| || |||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |
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| T |
23538490 |
tatattgtagttaacactcaaaataaaaggaataaaaataacaaaaaactaaccttggatcattttgtcgttcaatgttccactgatcgagtaaccatat |
23538589 |
T |
|
| Q |
809 |
ccaagattgcattttgatatcctccaaccatttttcaatgtctgcgactcta-cccctaataagatgt-attcgttattctc--aatgctccaagtagtc |
904 |
Q |
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| T |
23538590 |
ccaagattgcattatgatatcctccaaccatttttcaatgtctgcgactctatcccaaaataagatgtaattctttactctccaaatgcttcaagtagtc |
23538689 |
T |
|
| Q |
905 |
gc |
906 |
Q |
| |
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|| |
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| T |
23538690 |
gc |
23538691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 436 - 555
Target Start/End: Original strand, 23538308 - 23538427
Alignment:
| Q |
436 |
attgttttctaatcggtttaaaatcatgctatagaatatatttttggactattgatcagagcttgaaccctaacaaataagaagataggagaagctcaat |
535 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |
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| T |
23538308 |
attgttttttaattggtttaaaatcatgctatagaatatatttttggactattgatcagagtttgaaccctaactaataagaaggtaggagaagctcaat |
23538407 |
T |
|
| Q |
536 |
aacgctaaattaacgataac |
555 |
Q |
| |
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||| |||||||| |||||| |
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| T |
23538408 |
tacgttaaattaatgataac |
23538427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 804 - 906
Target Start/End: Original strand, 23468112 - 23468218
Alignment:
| Q |
804 |
catatccaagattgcattttgatatcctccaaccatttttcaatgtctgcgactctacccct-aataagatgt-attcgttattctc--aatgctccaag |
899 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |||||||||| |||| ||| |||| |||||| |||| |
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| T |
23468112 |
catatccaagattgcattatgatatcctccaaccatttttcaatgtttgcgactctatccctaaataagatgtaattctttactctccaaatgcttcaag |
23468211 |
T |
|
| Q |
900 |
tagtcgc |
906 |
Q |
| |
|
||||||| |
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|
| T |
23468212 |
tagtcgc |
23468218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 629 - 681
Target Start/End: Original strand, 23466867 - 23466919
Alignment:
| Q |
629 |
ggtagaatttaatataatgatactatatgtcaaatattgcggattaatatatt |
681 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23466867 |
ggtagaatttaatataatgatactatatgtcaaatattgcggattaatatatt |
23466919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 713 - 792
Target Start/End: Original strand, 23466914 - 23466993
Alignment:
| Q |
713 |
tatattgtagttaacattcaaaataaaaggaagtaagataacaaaaagctaaccttagatcattttgtcgttcaatgttc |
792 |
Q |
| |
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|||||||||||||||| |||||||||| |||| || |||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
23466914 |
tatattgtagttaacactcaaaataaacggaataaaaataacaaaaaactaaccttggatcattttgtcgttcaatgttc |
23466993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 23543990 - 23544131
Alignment:
| Q |
16 |
ggtaatgatttgaataacaataggcttgagcattattactacactatcgctgcactcggagtcttgaatctgttgtatttcatgttctttgctcgtcggt |
115 |
Q |
| |
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||||||||||||||||| |||||||||||| |||||||||| ||||| |||| || |||| |||||| |||||||||| |||||||||||||| | |
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| T |
23543990 |
ggtaatgatttgaataagaataggcttgagtattattactatactattgctgttcttggagggttgaatttgttgtattttttgttctttgctcgttttt |
23544089 |
T |
|
| Q |
116 |
ttttgaatagtgaggtgctacaaagacagactcaaagtgaag |
157 |
Q |
| |
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|| | |||||||||| |||| |||||| ||||||||||| |
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| T |
23544090 |
ttctatgtagtgaggtgttacagagacagggtcaaagtgaag |
23544131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 629 - 681
Target Start/End: Original strand, 23538443 - 23538495
Alignment:
| Q |
629 |
ggtagaatttaatataatgatactatatgtcaaatattgcggattaatatatt |
681 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23538443 |
ggtagaatctaatataatgatactatatgtcaaatattgcagattaatatatt |
23538495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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