View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5797-Insertion-5 (Length: 902)

Name: NF5797-Insertion-5
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5797-Insertion-5
NF5797-Insertion-5
[»] chr3 (1 HSPs)
chr3 (9-902)||(41674690-41675567)


Alignment Details
Target: chr3 (Bit Score: 707; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 9 - 902
Target Start/End: Original strand, 41674690 - 41675567
Alignment:
Q  9 taacttaacttaacaccacacaaacaaacactcatttgtctcttcgtgatccctttcctcctacattggtcttcttctcgtcctttcgaatcccgcatgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41674690 taacttaacttaacaccacacaaacaaacactcatttgtctcttcgtgatccctttcctcctacattggtcttcttctcgtcctttcgaatcccgcatgg 41674789  T
Q  109 agtctctagaactcccccgtctttttctccatcatccccgtgcatcttcagctccaactcgacctcatgctcatagtaccaccaattcctcacgattctt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41674790 agtctctagaactcccccgtctttttctccatcatccccgtgcatcttcagctccaactcgacctcatcctcatagtaccaccaattcctcacgattctt 41674889  T
Q  209 acctcaattgggtttcccttctaagctcaaaaaacctatcaaaaatgctaccttacgctctatttccggtgcttcacaagacggacctatttccttcgaa 308  Q
    ||||||||| |||||||||||||||||||||||            ||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  41674890 acctcaattcggtttcccttctaagctcaaaaa------------tgctaccttacgctctatttccgtttcttcacaagacggacctatttccttcgaa 41674977  T
Q  309 gacgaaacccaacagctccgtcatcaagatgaagaagaagatgagggacgtttattatctagagagattgacgattttggttctcttgttgcctttcgct 408  Q
    |||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  41674978 gacgaaacccaacagctccgtcatcaagatcaaga---agatgagggacgtttattatccagagagattgacgattttggttctcttgtttcctttcgct 41675074  T
Q  409 tgactcctcacaatgcctctgcctctgcctctggtatctattcctttccttttcattccctattttctaaattcttactatcttcgtatgcattattacc 508  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41675075 tgactcctcactctgcctctgcctctgcctctggtatctattcctttccttttcattccctattttctaaattcttactatcttcatatgcattattacc 41675174  T
Q  509 atcttctacttcaaattcttttgctaggcttattcaattcccctattcaatagccaagtttttattatgttaatgttttctcctgctc-tttaagtatat 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||    
T  41675175 atcttctacttcaaattcttttgctaggcttattcaattcccctattcaatatccaag-ttttattatgttaatgttttctcctgctcttttaagtgtat 41675273  T
Q  608 gtttgtatgtgaggtaggtttcgcaaccatcatttttgttcaaccttcaaactatagcttttaccaaacttgttgtggctcactatgatt-ccgacaata 706  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41675274 gtttgtatgtgaggtaggtttcccaaccatcatttttgttcaaccttcaaactatagcttttaccaaacttgttgtggctcactatgattcccgacaata 41675373  T
Q  707 tcaccgtgaattcaaacatgccctagnnnnnnnnnncatggtgagaaattctccaaacgcacagcgcaactactcaatagataggatttttagctttagt 806  Q
    ||||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41675374 tcaccgtgaattcaaacatgccctag--tttattttcttggtgagaaattctccaaacgcacagcgcaactactcaatagataggatttttagctttagt 41675471  T
Q  807 aagtcac-gagtatattgcgttgggagacaagaaacatcagtgaaatgcgtgttaaaaaaggctaactcctttcaacttcttatatccttagttcaa 902  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41675472 aagtcactgagtatattgcattgggagacaagaaacatcagtgaaatgcgtgttaaaaaaggctaactcc-ttcaacttcttatatccttagttcaa 41675567  T

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