View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5797-Insertion-8 (Length: 793)
Name: NF5797-Insertion-8
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797-Insertion-8 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Complemental strand, 4514327 - 4513806
Alignment:
| Q |
17 |
tttgaaaactttgcatcaattggataatgtcgttgattagtatttaaaaaatcctttgcttcatatggaatgatctccaacattatctttgcctttgaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
4514327 |
tttgaaaactttgcatcaattggataatgtcgttgaatagtatttgaaaaatcatttgcttcatatggaatgatctgctacattatctttgcctttgaat |
4514228 |
T |
|
| Q |
117 |
ttatttgtttgtttatgcacttggtcagaagaaaacaagctaaaataagatgagaagatatttggattataccttctataggatgaataattataaggaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4514227 |
ttatttgtttgtttatgcacttggtcagaagaaaacaagctgaaataagatgagaagatatttggattataccttctataggatgaataatgataaggaa |
4514128 |
T |
|
| Q |
217 |
gttgagtnnnnnnncatgatatctaggtatgttgaaagtccaagagatacaagcatttgttggatcgcgaagatttttaacgagatcatgaggtcaaaga |
316 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4514127 |
gttgagtcaaaaaacatgatatctaggtatgttgaaattccaagagatacaagcatttgttggatcgcgaagatttttaacgagatcatgaggtcaaaga |
4514028 |
T |
|
| Q |
317 |
aattgttggactagttaaaaagaaacacattaactttgatttataagaacgaaggagatatnnnnnnnnttacgcatgttatagagtgattaaacgtatg |
416 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| || ||||||||||||| |
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|
| T |
4514027 |
aattgttggactagttgagaagaaacacattaacttcgatttataagaacgaaagagatat-aaaaaaattacgcatgttataaagggattaaacgtatg |
4513929 |
T |
|
| Q |
417 |
aaccatactatgaaggtattggaaatagtggttgagaagagactaaaaagagagactcaaataattggaaattaaatatggttttagacatgggaggtga |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
4513928 |
aaccatactatgaaggtattggaaatagtgattgagaagagactaaaaagagagactcaaataattggaaattaaatatggttttaggcatgggatgtga |
4513829 |
T |
|
| Q |
517 |
tctattatcgatgcaatatacaa |
539 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
4513828 |
tctattatggatgcaatatacaa |
4513806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 544 - 676
Target Start/End: Complemental strand, 4513772 - 4513640
Alignment:
| Q |
544 |
ataacactatagatacaatattttgagttatatttacaacggtatacaaaaccattgaaaaagaaatgatttttcaattagataattgtgtacaagatac |
643 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4513772 |
ataacaatatagatgcaatattttgagttatatttacaacggtatccaaaaccattgaaaaagaaatgatttttcaattagataattgtgtacaagatac |
4513673 |
T |
|
| Q |
644 |
ttatattatgtggtttacaagatacttaaacta |
676 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
4513672 |
ttaaattatgtggtttacaagatacttaaacta |
4513640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 675 - 793
Target Start/End: Complemental strand, 4513358 - 4513240
Alignment:
| Q |
675 |
tatgaaaatgcgacatgaacgagtccttttcgctttcacttccttcatgtgcaataatttacactagattacaaacatcattcctttaattacgtggatt |
774 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4513358 |
tatgaaaatgtgacatgaacgagtccttttcgctttcacttccttcatgtgcaataaattacactagattacaaacatcattccttaaattacgtggatt |
4513259 |
T |
|
| Q |
775 |
acaagatagttaaactatg |
793 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
4513258 |
acaagatagttaaactatg |
4513240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 702 - 750
Target Start/End: Original strand, 4513160 - 4513208
Alignment:
| Q |
702 |
tttcgctttcacttccttcatgtgcaataatttacactagattacaaac |
750 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4513160 |
tttcgctttcgcttccttcatgtgcaataatttacactagatttcaaac |
4513208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 23183017 - 23183097
Alignment:
| Q |
15 |
attttgaaaactttgcatcaattggataatgtcgttgattagtattt----aaaaaatcctttgcttcatatggaatgatc |
91 |
Q |
| |
|
|||||||||| ||| | |||||||||||| |||||||| ||||| || |||||||||||||||| |||| |||||||| |
|
|
| T |
23183017 |
attttgaaaaatttacctcaattggataacgtcgttgaatagtacttgaaaaaaaaatcctttgctttatattgaatgatc |
23183097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 29966645 - 29966508
Alignment:
| Q |
17 |
tttgaaaactttgcatcaattggataatgtcgttgattagtatttaaaaaatcctttgcttcatatggaatgatctccaacattatctttgcctttgaat |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| | | ||||| |||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
29966645 |
tttgaaaactttgcttcaattggataatgtcgttgaatagtactcgagaaatcatttgcttcttatggaatgatccattacattatctttgcgtttgaat |
29966546 |
T |
|
| Q |
117 |
ttatttgtttgtttatgcacttggtcagaagaaaacaa |
154 |
Q |
| |
|
||||||||||| || | ||| |||| ||||||| |||| |
|
|
| T |
29966545 |
ttatttgtttgattctacacgtggttagaagaagacaa |
29966508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 21538940 - 21538800
Alignment:
| Q |
15 |
attttgaaaactttgcatcaattggataatgtcgttgattagtatttaaaaaatcctttgcttcatatggaatgatctccaacattatctttgcctttga |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| |||| |||| |||||||||||| ||||||||||||| | ||||| | |||||||||| |
|
|
| T |
21538940 |
attttgaaaactttgcctcaattggataatatcgttgaatagtgcttaagaaatcctttgctgcatatggaatgatttgttacatttttcttgcctttga |
21538841 |
T |
|
| Q |
115 |
atttatttgtttgtttatgcacttggtcagaagaaaacaag |
155 |
Q |
| |
|
|||| ||||||||||| |||| |||||| ||||| ||||| |
|
|
| T |
21538840 |
atttctttgtttgtttttgcatgtggtcaaaagaatacaag |
21538800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 42166161 - 42166213
Alignment:
| Q |
102 |
tctttgcctttgaatttatttgtttgtttatgcacttggtcagaagaaaacaa |
154 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
42166161 |
tctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaa |
42166213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 20748199 - 20748330
Alignment:
| Q |
15 |
attttgaaaactttgcatcaattggataatgtcgttgattagtatttaaaaaatcctttgcttcatatggaatgatctccaacattatctttgcctttga |
114 |
Q |
| |
|
||||||||||| ||| || | |||||||||||||| | ||||| | | |||||||||||||| ||| ||||||| | ||||| |||||||| |||| |
|
|
| T |
20748199 |
attttgaaaacgttgtctctaatggataatgtcgttaaatagtactagagaaatcctttgcttcttatcgaatgatgtgttacattctctttgccgttga |
20748298 |
T |
|
| Q |
115 |
atttatttgtttgtttatgcacttggtcagaa |
146 |
Q |
| |
|
|||| ||||||||||| ||||| |||| |||| |
|
|
| T |
20748299 |
atttttttgtttgtttttgcacgtggttagaa |
20748330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 14116726 - 14116838
Alignment:
| Q |
37 |
tggataatgtcgttgattagtatttaaaaaatcctttgcttcatatggaatgatctccaacattatctttgcctttgaatttatttgtttgtttatgcac |
136 |
Q |
| |
|
|||||||||||||||| |||| || ||||||| |||||||| || ||||||||| | ||||| || ||| |||||||||| |||||||||| | || |
|
|
| T |
14116726 |
tggataatgtcgttgaatagtcattcaaaaatcttttgcttctaatagaatgatctgctacattctccttgtctttgaattttcttgtttgtttcttcat |
14116825 |
T |
|
| Q |
137 |
ttggtcagaagaa |
149 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14116826 |
gtggtcagaagaa |
14116838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 17651404 - 17651346
Alignment:
| Q |
32 |
tcaattggataatgtcgttgattagtatttaaaaaatcctttgcttcatatggaatgat |
90 |
Q |
| |
|
||||||||||||||||||||| ||||| || | |||||| ||||||| ||||||||||| |
|
|
| T |
17651404 |
tcaattggataatgtcgttgagtagtacttgagaaatcccttgcttcttatggaatgat |
17651346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 21545996 - 21545926
Alignment:
| Q |
17 |
tttgaaaactttgcatcaattggataatgtcgttgattagtatttaaaaaatcctttgcttcatatggaat |
87 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| | ||||| |||| || || ||| |||| |||||||| |
|
|
| T |
21545996 |
tttgaaaattttgcctcaattggataatgtcgttaaatagtacttaagaagtcttttacttcttatggaat |
21545926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 16404520 - 16404383
Alignment:
| Q |
17 |
tttgaaaactttgcatcaattggataatgtcgttgattagtatttaaaaaatcctttgcttcatatggaatgatctccaacattatctttgcctttgaat |
116 |
Q |
| |
|
|||||||||||| | |||| |||| || |||||||| || |||| | | | ||||||||| ||||||||||| | ||| | |||||| | ||||| |
|
|
| T |
16404520 |
tttgaaaacttttcctcaaatggagaacgtcgttgaataatattagaggagttctttgcttcttatggaatgatttgttacaatctctttgtcattgaag |
16404421 |
T |
|
| Q |
117 |
ttatttgtttgtttatgcacttggtcagaagaaaacaa |
154 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
16404420 |
ttatttgtttgtttcagcacgtggtcagaagaagacaa |
16404383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39938457 - 39938498
Alignment:
| Q |
17 |
tttgaaaactttgcatcaattggataatgtcgttgattagta |
58 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
39938457 |
tttgaaaactttgcctcaattgtataatgtcgttgaatagta |
39938498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 11848719 - 11848661
Alignment:
| Q |
96 |
acattatctttgcctttgaatttatttgtttgtttatgcacttggtcagaagaaaacaa |
154 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| ||| ||||| |||||| ||||| |||| |
|
|
| T |
11848719 |
acattatcttttcctttgaatttctttgtttttttctgcacgtggtcaaaagaagacaa |
11848661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 47597504 - 47597566
Alignment:
| Q |
68 |
tcctttgcttcatatggaatgatctccaacattatctttgcctttgaatttatttgtttgttt |
130 |
Q |
| |
|
|||||||||||| |||||||||| | ||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
47597504 |
tcctttgcttcaaatggaatgattcactacattctctttgtctttgaatttctttgtttgttt |
47597566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 10686601 - 10686658
Alignment:
| Q |
97 |
cattatctttgcctttgaatttatttgtttgtttatgcacttggtcagaagaaaacaa |
154 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||| | ||| |||||||||||| |||| |
|
|
| T |
10686601 |
cattctctttgcccttgaatttctttgtttgtttctacacgtggtcagaagaatacaa |
10686658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 18530055 - 18530100
Alignment:
| Q |
13 |
agattttgaaaactttgcatcaattggataatgtcgttgattagta |
58 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| ||||||| ||||| |
|
|
| T |
18530055 |
agattttgaaaacattgcctcaattggataatatcgttgaatagta |
18530100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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