View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797_high_6 (Length: 306)
Name: NF5797_high_6
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 40118898 - 40119172
Alignment:
| Q |
13 |
aatataagcaagaacaaaatttcaatgctagcgttggagatgcttttattaattttggtcattcaatctcatgaatgacatcaatgataaagatacgtaa |
112 |
Q |
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| T |
40118898 |
aatataagcaagaacaaaatttcaatgcaagcgttggagatgcttttattaattttggtcattcgatctcatgaatgacatcaatgataaagatacgtaa |
40118997 |
T |
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| Q |
113 |
tataatgcctaaaaagtatgtaatatagattgatttcatnnnnnnnnnnttaacaaacttttatttatatttaagctcggagaaaggaaagattaaaact |
212 |
Q |
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| T |
40118998 |
tataatgcctaaaaagtatgtaatataaattgatttcataaaaaaaaaa-tagcaaatttttatttatatttaagatcggagaaaggaaatattaaaact |
40119096 |
T |
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| Q |
213 |
aactattgatcttgtgtattttttagctgactaatatccatacgaattaagaaagttaagttacgtgaaccgaaatg |
289 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
40119097 |
aactattgatcttgtgtatttcttagctgactaatat-catatgaattaagaaagttaagttacgtgaaccgaaatg |
40119172 |
T |
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