View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797_high_7 (Length: 283)
Name: NF5797_high_7
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 47896699 - 47896908
Alignment:
| Q |
1 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagggtggaggtaa |
100 |
Q |
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| T |
47896699 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaattaaagtgaagtgtggaggtaa |
47896798 |
T |
|
| Q |
101 |
gtctatgatttaagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896799 |
gtctatgatttaagaatagaaaattttccctacccatctcgtgtgaaccaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
47896898 |
T |
|
| Q |
201 |
gaaataaatt |
210 |
Q |
| |
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|||||||||| |
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| T |
47896899 |
gaaataaatt |
47896908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 47896907 - 47896944
Alignment:
| Q |
237 |
ttatttcaacatttctgtaatagcaagaacagtataat |
274 |
Q |
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| T |
47896907 |
ttatttcaacatttctgtaatagcaagaacagtataat |
47896944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 31212772 - 31212576
Alignment:
| Q |
1 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagggtggaggtaa |
100 |
Q |
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| T |
31212772 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtggagg--- |
31212676 |
T |
|
| Q |
101 |
gtctatgatttaagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
200 |
Q |
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| T |
31212675 |
----------taagaaaagaaaattttccctacccatctcgtgtgaaggaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
31212586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 31218527 - 31218331
Alignment:
| Q |
1 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagggtggaggtaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31218527 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtggagg--- |
31218431 |
T |
|
| Q |
101 |
gtctatgatttaagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
200 |
Q |
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| T |
31218430 |
----------taagaaaagaaaattttccctacccatctcgtgtgaaggaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
31218341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 31212531 - 31212467
Alignment:
| Q |
208 |
attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31212531 |
attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata |
31212467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 31218286 - 31218222
Alignment:
| Q |
208 |
attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218286 |
attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata |
31218222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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