View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797_high_9 (Length: 217)
Name: NF5797_high_9
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797_high_9 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 3572894 - 3573109
Alignment:
| Q |
2 |
ggtgaggtagtcgacccactctgcccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactca |
101 |
Q |
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|||||||| ||||||||||||| ||||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3572894 |
ggtgaggttgtcgacccactctacccaggtggtagttttgacccattaggcctagctgatgacccagaggcttttgcagagttaaaggtgaaagaactca |
3572993 |
T |
|
| Q |
102 |
aaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactga |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3572994 |
aaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttgctga |
3573093 |
T |
|
| Q |
202 |
cccagttaacaacaat |
217 |
Q |
| |
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|||||||||||||||| |
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| T |
3573094 |
cccagttaacaacaat |
3573109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 3576177 - 3576392
Alignment:
| Q |
1 |
tggtgaggtagtcgacccactctgcccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactc |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576177 |
tggtgaggtagtcgacccactctacccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactt |
3576276 |
T |
|
| Q |
101 |
aaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactg |
200 |
Q |
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|| ||||| ||| |||||||||| || |||||||||||||| ||||| || |||||||||||||| |||||| ||||||| ||||| ||||| | |||| |
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| T |
3576277 |
aagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaaccggaaagggacctctagagaaccttgccgaccatatcactg |
3576376 |
T |
|
| Q |
201 |
acccagttaacaacaa |
216 |
Q |
| |
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|||| || |||||||| |
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| T |
3576377 |
accccgtcaacaacaa |
3576392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3585041 - 3584826
Alignment:
| Q |
1 |
tggtgaggtagtcgacccactctgcccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactc |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
3585041 |
tggtgaggtagtcgacccactctatccaggtggaagctttgacccattgggccttgctgaggaccccgaggcttttgcagagttaaaggttaaagaactc |
3584942 |
T |
|
| Q |
101 |
aaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactg |
200 |
Q |
| |
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|| ||||| |||||||| ||||| || ||||||||||||||||||||||| || || |||||||| |||||| || | || |||||||||||| | ||| |
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| T |
3584941 |
aagaatggtaggttagcgatgttctctatgtttggattctttgttcaagccatcgtgaccggaaagggacctttaaaaaaccttgctgaccacatcgctg |
3584842 |
T |
|
| Q |
201 |
acccagttaacaacaa |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
3584841 |
acccagttaacaacaa |
3584826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 3578033 - 3578225
Alignment:
| Q |
1 |
tggtgaggtagtcgacccactctgcccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactc |
100 |
Q |
| |
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||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3578033 |
tggtgaggtagtcgatccactctaccccggtggaagctttgacccattgggcctcgcagacgacccagaggcttttgcagagttaaaggttaaagaactc |
3578132 |
T |
|
| Q |
101 |
aaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccac |
193 |
Q |
| |
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|| ||||| |||||||||||||| || ||||||||||| || ||||| || |||||||||| ||| ||||| ||||||| |||||||||||| |
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| T |
3578133 |
aagaatggcaggttagctatgttctcgatgtttggatttttcgttcaggccattgtaaccgaaaagggaccactagagaaccttgctgaccac |
3578225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 3569850 - 3570062
Alignment:
| Q |
5 |
gaggtagtcgacccactctgcccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaa |
104 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||||||| |||||||| || || || || ||||||||||||||||| |||||||||||||| |||| |
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| T |
3569850 |
gaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaaggtgaaagaactaaaaa |
3569949 |
T |
|
| Q |
105 |
atggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgaccc |
204 |
Q |
| |
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|||| |||||||||||||| || |||||||||||||| ||||| || ||||| |||||||| |||||||| ||||| || |||||||||||| |||| || |
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| T |
3569950 |
atggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctgaccaccttgctgatcc |
3570049 |
T |
|
| Q |
205 |
agttaacaacaat |
217 |
Q |
| |
|
||||||||||||| |
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| T |
3570050 |
agttaacaacaat |
3570062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 3564199 - 3564414
Alignment:
| Q |
2 |
ggtgaggtagtcgacccactctgcccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactca |
101 |
Q |
| |
|
|||||||| || |||||||||| ||||||||| ||||||||||| |||||||| || || || || ||||||||||||||||| |||||||||||||| | |
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| T |
3564199 |
ggtgaggtggttgacccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaaggtgaaagaactaa |
3564298 |
T |
|
| Q |
102 |
aaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactga |
201 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||| || |||||||| ||||| || ||||| |||||||| ||||| || || ||||||||| |||| |
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|
| T |
3564299 |
aaaatggtaggttagctatgttctctatgtttggatttttcgttcaagccattgtgactggaaagggacctatcgagaacctcgccgaccaccttgctga |
3564398 |
T |
|
| Q |
202 |
cccagttaacaacaat |
217 |
Q |
| |
|
||| |||||||||||| |
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| T |
3564399 |
cccggttaacaacaat |
3564414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13276124 - 13276339
Alignment:
| Q |
1 |
tggtgaggtagtcgacccactctgcccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactc |
100 |
Q |
| |
|
||||||||| | |||||||||| ||||||||| ||||| ||||||||||| ||||| || |||||||| ||||||| |||||| || |||||||| | |
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| T |
13276124 |
tggtgaggtgattgacccactctacccaggtggtagcttcgacccattgggtctcgccgatgacccagaagcttttgtagagttgaaagtgaaagagatt |
13276223 |
T |
|
| Q |
101 |
aaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactg |
200 |
Q |
| |
|
|| ||||| |||||||| |||||||| |||||||||||||| |||||||| ||||| |||||||| |||||| | || || |||||||||||||| | | |
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| T |
13276224 |
aagaatggtaggttagccatgttttctatgtttggattcttcgttcaagccattgtgaccggaaagggacctttggaaaaccttgctgaccacctcgcag |
13276323 |
T |
|
| Q |
201 |
acccagttaacaacaa |
216 |
Q |
| |
|
|||| || |||||||| |
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| T |
13276324 |
acccggtcaacaacaa |
13276339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38357213 - 38357428
Alignment:
| Q |
1 |
tggtgaggtagtcgacccactctgcccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaactc |
100 |
Q |
| |
|
||||||||| || |||||||| | |||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||| |
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|
| T |
38357213 |
tggtgaggttgttgacccactatacccaggaggcagctttgacccattgggcctagctgacgacccagaggctttcgcagagttgaaggttaaggaactc |
38357312 |
T |
|
| Q |
101 |
aaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactg |
200 |
Q |
| |
|
|| || || || ||||| ||||| || ||||| |||||||||||||| |||||||| |||||||| |||||| | ||||| ||||| || || ||| | | |
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| T |
38357313 |
aagaacggtagattagccatgttctctatgttcggattctttgttcaggctattgtgaccggaaagggacctttggagaaccttgccgatcatcttgccg |
38357412 |
T |
|
| Q |
201 |
acccagttaacaacaa |
216 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
38357413 |
acccagtcaacaacaa |
38357428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 33992739 - 33992644
Alignment:
| Q |
89 |
gtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatctt |
184 |
Q |
| |
|
||||| ||| ||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||| || || ||||||||| | ||||||||| |
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| T |
33992739 |
gtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaatctt |
33992644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 42603065 - 42603165
Alignment:
| Q |
56 |
gctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattg |
155 |
Q |
| |
|
||||| ||||| || || || |||||||| ||||| || |||||||| || || | || |||||||| ||||||||||| |||||||||||||| |||| |
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| T |
42603065 |
gctgatgaccccgatgcattcgcagagttgaaggtcaaggaactcaagaacggccgattggctatgttctccatgtttggtttctttgttcaagccattg |
42603164 |
T |
|
| Q |
156 |
t |
156 |
Q |
| |
|
| |
|
|
| T |
42603165 |
t |
42603165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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