View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5797_low_1 (Length: 683)
Name: NF5797_low_1
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797_low_1 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 635; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 18 - 683
Target Start/End: Complemental strand, 43054114 - 43053447
Alignment:
| Q |
18 |
aagagtcatctaaaaaagaaaccaatgtacaacaacatcaccggacttcagacgcagaaaggatatgatactgttccaacagaaatgataaactcttcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054114 |
aagagtcatctaaaaaagaaaccaatgtacaacaacatcaccggacttcagacgcagaaaggatatgatactgttccaacagaaatgataaactcttcct |
43054015 |
T |
|
| Q |
118 |
acagaaagaggagagcaaggggcatgaagtctaaaggcagagcaaaatttgtaaacatccttaccaagactcaatcccacgaagtctatatcaatcagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054014 |
acagaaagaggagagcaaggggcatgaagtctaaaggcagaacaaaatttgtaaacatccttaccaagactcaatcccacgaagtctatatcaatcagta |
43053915 |
T |
|
| Q |
218 |
gcaaccgattatagtttctcccaaaatctacatatagtcagagaagaacctgcagtaaaaagcacaacactcaatgttatccacgatatcttacaaaatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43053914 |
gcaaccgattatagtttctcccaaaatctacatatagtcagagaagaacctgcagtaaaaagcacaacactcaatgttatccacgatatcttacaaa-tg |
43053816 |
T |
|
| Q |
318 |
cctataagttatatactgtcaacccatcttct---ccatccgagtacatttctcctttgtctgcactgcccgacttggaacaactggtgtagtagcgcat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43053815 |
cctataagttatatactgtcaacccatcttcttctccatccgagtacatttctcctttgtctgcactgcccgacttggaacaactggtgtagtagcgcat |
43053716 |
T |
|
| Q |
415 |
ttagaggatgaaccaccggaatcctttttccgatcctttgttcccaaagtcttagaggatgaaacaccagaatcctttttctgatcctttgttcccaaac |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43053715 |
ttagaggatgaaccaccggaatcctttttccgatcctttgttcccaaagtcttagaggatgaaacaccagaatcctttttctgatcctttgttcccaaac |
43053616 |
T |
|
| Q |
515 |
tcagttctttcagggatttcgaggcactgtaagttccaaactcgatatatatttgaggcgatgaagaattctggtcctgctcagattgatgagatgctga |
614 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43053615 |
tcagttctttcagggattttgaggcactgtaagttccaaactcgatatatatttgaggcgatgaagaattctggtcctgctcagattgatgagatgctga |
43053516 |
T |
|
| Q |
615 |
taaactgctgttgccaatgcttgaaagaacaggaaaatcttcctttgagagctcaaaggacttggaatt |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43053515 |
caaactgctgttgccaatgcttgaaagaacaggaaaatcttcctttgagagctcaaaggacttggaatt |
43053447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 250 - 683
Target Start/End: Complemental strand, 43037697 - 43037261
Alignment:
| Q |
250 |
tatagtcagagaagaacctgcagtaaaaagcacaacactcaatgttatccacgatatcttacaaaatgcctataagttatatactgtcaacccatcttct |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
43037697 |
tatagtcagagaagaacctgcagtaaaaagcacaacactcgatgttatcctcgatatcttacaaaatgactataagttagatactgtcaacccatcttct |
43037598 |
T |
|
| Q |
350 |
---ccatccgagtacatttctcctttgtctgcactgcccgacttggaacaactggtgtagtagcgcatttagaggatgaaccaccggaatcctttttccg |
446 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43037597 |
tctccatccgagaacacttctcctttgcctgcactgcccgacttggaacaactggtgtagtagcgcctttagaggatgaaccaccggaatcctttttccg |
43037498 |
T |
|
| Q |
447 |
atcctttgttcccaaagtcttagaggatgaaacaccagaatcctttttctgatcctttgttcccaaactcagttctttcagggatttcgaggcactgtaa |
546 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
43037497 |
atcctttgttcccaatgtcttagaggatgaaacaccagaatcctttttctgatcctttgttcccaaactcagttctttcagggattttgagacactgtaa |
43037398 |
T |
|
| Q |
547 |
gttccaaactcgatatatatttgaggcgatgaagaattctggtcctgctcagattgatgagatgctgataaactgctgttgccaatgcttgaaagaacag |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43037397 |
gttccaaactcgatatatatttgaggcgatgaagaattctggtcctgctcagattgatgagatgctgacaaactgctgttgccaatgcttgaaagaacag |
43037298 |
T |
|
| Q |
647 |
gaaaatcttcctttgagagctcaaaggacttggaatt |
683 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43037297 |
gaaaatcttcctttgagagctcaaaggacttggaatt |
43037261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 43037986 - 43037754
Alignment:
| Q |
19 |
agagtcatctaaaaaagaaaccaatgtacaacaacatcaccggacttcagacgcagaaaggatatgatactgttccaacagaaatgataaactcttccta |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43037986 |
agagtcatttaaaaaagaaaccaatgtacaacaacatcaccggactttagaagcagaaaggatatgatactgttccaacagaagtgataaactcttccta |
43037887 |
T |
|
| Q |
119 |
cagaaagaggagagcaaggggcatgaagtctaaaggcagagcaaaatttgtaaacatccttaccaagactcaatcccacgaagtctatatcaatcagtag |
218 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
43037886 |
cagaaagaggagagcaaggggtatggagtctaaaggcagaacaaaacttgtaaacatccttaccaagacttaatcccacaaagtctatatcaatcagtag |
43037787 |
T |
|
| Q |
219 |
caaccgattatagtttctcccaaaatctacata |
251 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| |
|
|
| T |
43037786 |
caaccgactatagtttctccctaaatctacata |
43037754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University