View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797_low_2 (Length: 603)
Name: NF5797_low_2
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797_low_2 |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 75 - 416
Target Start/End: Complemental strand, 2183134 - 2182794
Alignment:
| Q |
75 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttgggttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaat |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2183134 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttgggttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaat |
2183035 |
T |
|
| Q |
175 |
aattgaannnnnnnaagaaaaagagaaatgtcgtagcattgagggagatgtgaaaacaaccttcgttttctttagtttctagcttccacgcaatttcaaa |
274 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
2183034 |
aattgaatttttttaagaaaaagagaaatgtcgtagcattgagggagatgtgaaaacaaccttcgttttctttagtttctagctttcacacaatttcaaa |
2182935 |
T |
|
| Q |
275 |
caccactagactgaaatggcccacatccaaacatcttattaaagacaaaataattgtatcaatgataatgtgttatttaaacgatcacatgtataataac |
374 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| | |
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| T |
2182934 |
caccactagactaaaatggcccacatccaaacatcttattaaagacaaaataattgtatcaatgataatgtgttatttgaacaatc-tatgtataatttc |
2182836 |
T |
|
| Q |
375 |
ttatgaaacaactataaatttacgtagaaaagtagatattga |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2182835 |
ttatgaaacaactataaatttacgtaaaaaagtagatattga |
2182794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 75 - 420
Target Start/End: Original strand, 2158928 - 2159274
Alignment:
| Q |
75 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttggg-ttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaa |
173 |
Q |
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||||||||||||| |||| | || |||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
2158928 |
aagttggttgcaagtcgacactattgtgtccgaaggagtctttggggttggactaagtcttgcatactcctaaaatgaatacttaaaacaatattttcaa |
2159027 |
T |
|
| Q |
174 |
taattgaannnnnnnaagaaaaagagaaatgtcgtagcattgagggagatgtgaaaacaaccttcgttttctttagtttctagcttccacgcaatttcaa |
273 |
Q |
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|||| || |||||||| |||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
2159028 |
taatgaaatttttttaagaaaaa-agaaatgttgtagcattgagggaggtgtgaaaccaaccttccttttctttagtttctggtttccacgcaatttcaa |
2159126 |
T |
|
| Q |
274 |
acaccactagactgaaatggcccacatccaaacatcttattaaagacaaaataattgtatcaat-gataatgtgttatttaaacgatcacatgtataata |
372 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| ||||| ||| |
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| T |
2159127 |
acaccactagactaaaatggcccacatttaaacatcttattaaagacaaaataattgtatatatatctaatgtgttatttaaacaatcatgtgtatgata |
2159226 |
T |
|
| Q |
373 |
acttatgaaacaactataaatttacgtagaaaagtagatattgacaac |
420 |
Q |
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||||||| |||||| |||||||||| |||||| |||||||||||||| |
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| T |
2159227 |
acttatggaacaaccataaatttacaaagaaaaatagatattgacaac |
2159274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 534 - 590
Target Start/End: Complemental strand, 2182690 - 2182634
Alignment:
| Q |
534 |
tctttcattttaatattatttatttctatgttcaagattgtctcaaaccattcatct |
590 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2182690 |
tctttcattttaatattatttatttctatgtccaagattgtctcaaaccattcatct |
2182634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2184139 - 2184089
Alignment:
| Q |
18 |
gattgtggcatagccatgagaatagaggtatgagaaatgagatatgagaat |
68 |
Q |
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| T |
2184139 |
gattgtggcatagccatgagaatagaggtatgagaaatgagatatgagaat |
2184089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 1191 - 1297
Alignment:
| Q |
75 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttgggttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaat |
174 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1191 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttgggttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaat |
1290 |
T |
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| Q |
175 |
aattgaa |
181 |
Q |
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||||||| |
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| T |
1291 |
aattgaa |
1297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 187 - 237
Alignment:
| Q |
18 |
gattgtggcatagccatgagaatagaggtatgagaaatgagatatgagaat |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
187 |
gattgtggcatagccatgagaatagaggtatgagaaatgagatatgagaat |
237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 42075281 - 42075327
Alignment:
| Q |
372 |
aacttatgaaacaactataaatttacgtagaaaagtagatattgaca |
418 |
Q |
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||||| || ||||||||||||||||| ||||||||||| |||||||| |
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| T |
42075281 |
aacttttggaacaactataaatttacatagaaaagtaggtattgaca |
42075327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 1863145 - 1863101
Alignment:
| Q |
370 |
ataacttatgaaacaactataaatttacgtagaaaagtagatatt |
414 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
1863145 |
ataacttatgaaacaaccataaatttataaagaaaagtagatatt |
1863101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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