View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797_low_3 (Length: 369)
Name: NF5797_low_3
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 31826918 - 31827274
Alignment:
| Q |
1 |
tttatacacttattcatatcactaacacatcactctcataaagagtgtacacaacatttttcaaaaagaattgatggctatgtactggacaaattcacca |
100 |
Q |
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| T |
31826918 |
tttatacagttattcatatcactaacacatcactctcataaagagtgtacacaacatttttcaaaaacaattgatggctatgtactggacaaattcacca |
31827017 |
T |
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| Q |
101 |
agacaaagtcactttaatcatattcaaacccaaaaggtataaacaacaattagatgaatacattttaggaagccatatattcttttctcaaaattgcatt |
200 |
Q |
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| T |
31827018 |
agacaaagtcactttaatcatattcaaacccaaaaggtataaacaacaattagataaatacattttaggaagctatatattcttttctcaaaattgcatt |
31827117 |
T |
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| Q |
201 |
gtttaaaccgttgactctatctaatgtctaacattttgcaagatgtggcaggaaactatnnnnnnnnccaacaacttgtgtcgctgcaatgcaataatca |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31827118 |
gtttaaaccgttggctctatctaatgtctaacattttgcaagatgtggcagaaaactataaaaaaaaccaacaacttgtgtcgctgcaatgcaataatca |
31827217 |
T |
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| Q |
301 |
ggcaaaaaattctttaagtggtaattgagattcttttcttaaaccgtttattagtat |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31827218 |
ggcaaaaaattctttaagtggtaattgagattcttttcttaaaccgtttattagtat |
31827274 |
T |
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