View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5797_low_4 (Length: 333)
Name: NF5797_low_4
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5797_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 33233563 - 33233779
Alignment:
| Q |
11 |
attattcttactactatgctaattagccttttgacctatcacatctatcaaaactgcttaggctctaaattctaaaaactaaacaatgtaaattgattag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33233563 |
attattcttactactatgctaattagccttttgacctatcacatctatcaaaactgcttaggctctaaattctaaaaaccaaacaatgtaaattgattag |
33233662 |
T |
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| Q |
111 |
aaaagagtaaatcatttgggatgttaacataatatcttgttaaatatatgaaaatagaggaagcaacttaatgaaaagagaggnnnnnnncttacactgg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
33233663 |
aaaagagtaaatcatttgggatgttaacataatatcttgttaaatatatgaaaatagtggaagcaacttaatgaaaagagaggaaaaaaacttacactgg |
33233762 |
T |
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| Q |
211 |
gtcgatctaggtggggg |
227 |
Q |
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||||||||||||||||| |
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| T |
33233763 |
gtcgatctaggtggggg |
33233779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 40632126 - 40632303
Alignment:
| Q |
11 |
attattcttactactatgctaattagccttttgacctatcacatctatcaaaactgcttaggctctaaattctaaaaactaaacaatgtaaattgattag |
110 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||| ||| | ||||||||||||| ||||| ||||||||| ||||||||||||| ||||| |
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| T |
40632126 |
attattcttactaccatgcgaattagccttttgacctatcacatttattagaactgcttaggctataaatactaaaaactgaacaatgtaaattaattag |
40632225 |
T |
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| Q |
111 |
aaaag-agtaaatcatttgggatgttaacataatatcttgttaaatatatgaaaatagaggaagcaacttaatgaaaa |
187 |
Q |
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| T |
40632226 |
tgaagaaaaaaatcatttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaa |
40632303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 42775586 - 42775748
Alignment:
| Q |
23 |
actatgctaattagccttttgacctatcacatctatcaaaactgcttaggctctaaattctaaaaactaaacaatgtaaattgattagaaaagagtaaat |
122 |
Q |
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||||||||||||||||||||| | ||||||||||| | ||| ||||||||| | ||| || ||||||||||| || |||||||||||| |||| || |
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| T |
42775586 |
actatgctaattagccttttgtctcatcacatctattagaaccgcttaggctat-aatactgaaaactaaacagtgcaaattgattagagaaga-aaacg |
42775683 |
T |
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| Q |
123 |
catttgggatgttaacataatatcttgttaaatatatgaaaatagaggaagcaacttaatgaaaa |
187 |
Q |
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|| || | ||||||||| |||||| ||| |||||||||||||| ||||||||||||| |||| |
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| T |
42775684 |
caattagcatgttaacaaaatatcacattacatatatgaaaatagtagaagcaacttaattaaaa |
42775748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 52738223 - 52738174
Alignment:
| Q |
119 |
aaatcatttgggatgttaacataatatcttgttaaatatatgaaaataga |
168 |
Q |
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||||||||| | || |||||| ||||||||||||||||||| |||||||| |
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| T |
52738223 |
aaatcatttagcatattaacaaaatatcttgttaaatatataaaaataga |
52738174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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