View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5798-Insertion-3 (Length: 685)

Name: NF5798-Insertion-3
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5798-Insertion-3
NF5798-Insertion-3
[»] chr1 (7 HSPs)
chr1 (9-675)||(37939279-37939945)
chr1 (249-667)||(37939966-37940387)
chr1 (249-664)||(37939786-37940204)
chr1 (247-547)||(37940099-37940402)
chr1 (249-668)||(37939699-37940118)
chr1 (248-556)||(37940145-37940456)
chr1 (247-336)||(37940369-37940458)


Alignment Details
Target: chr1 (Bit Score: 607; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 9 - 675
Target Start/End: Original strand, 37939279 - 37939945
Alignment:
Q  9 tcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgctgcct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939279 tcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgctgcct 37939378  T
Q  109 caaattctaattctcttgacttttcttctacagcaatgaaatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttccct 208  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939379 caaattctaattctcttgacttttcttctacagcaatgacatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttccct 37939478  T
Q  209 tcgttccgttgaatgttgttctggttctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagcc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939479 tcgttccgttgaatgttgttctggttctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagcc 37939578  T
Q  309 acgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggcttga 408  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||    
T  37939579 acaggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttaccatttctctaggatcaacttcagtaaccacaggtttga 37939678  T
Q  409 cttttactgattctgtcagatcaacttcagtaaccacgggttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctc 508  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  37939679 cttttactgattctgtcagatcaacttcagtaaccaggggttcttttactgtttttgtaatttcaacttctgtagccacagcttcttcttttactgtctc 37939778  T
Q  509 tgtaggatcaacttcagtgactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctca 608  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37939779 tgtaggatcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctca 37939878  T
Q  609 actacagttgtcacaggtccttcttttacggtttctgtagcttcaacttcggtagccacaaattctt 675  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  37939879 actacagttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattctt 37939945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 249 - 667
Target Start/End: Original strand, 37939966 - 37940387
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    |||||||||||| |||| |||||  ||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  37939966 tcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag 37940065  T
Q  349 tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggcttgacttttactgattctgtcagatcaacttcagtaaccacggg 448  Q
    ||||  ||||||| |||||| ||||||||||||  |||||||||||  ||||||| |   ||||||| | ||||||  | |||||||||||| |||||||    
T  37940066 tagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacggg 37940165  T
Q  449 ttct---tttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtgactataggttcgtctttt 545  Q
    ||||   ||||||||||||||||||||| |||| ||||| | || |||||||||||| || |||||||||||||||||||| || | |||||||||||||    
T  37940166 ttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtctttt 37940265  T
Q  546 accgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggtccttcttttacggtttctg 645  Q
    || ||||||||  |||  | |||||||||||||||||| |||||||| ||||| |||| ||||||| |||| | |||| || |||||||||  |||||||    
T  37940266 acggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctg 37940365  T
Q  646 tagcttcaacttcggtagccac 667  Q
    |||| |||||||| ||| ||||    
T  37940366 tagcctcaacttcagtaaccac 37940387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 249 - 664
Target Start/End: Original strand, 37939786 - 37940204
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    |||||||||||||| | ||||||  ||||||| |||||||| | ||| | |||||||||  | ||||| ||||||||| |||||||||  | |||| |||    
T  37939786 tcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctcaactacag 37939885  T
Q  349 tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggcttgacttttactgattctgtcagatcaacttcagtaaccacggg 448  Q
    | | |||||||||||||||| | ||||||||||  |||||||||||| ||||||  |   ||||||||| ||||||    |||||||||||| |||| ||    
T  37939886 ttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactgg 37939985  T
Q  449 ttct---tttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtgactataggttcgtctttt 545  Q
    ||||   |||||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||  |||||||||||  ||  |||||||||||||    
T  37939986 ttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtctttt 37940085  T
Q  546 accgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggtccttcttttacggtttctg 645  Q
    ||||||||||| ||||| | |||||| ||  ||||||| ||||||||||||||||||||||||||| |||| | ||| ||| |||||||||| |||||||    
T  37940086 accgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctg 37940185  T
Q  646 tagcttcaacttcggtagc 664  Q
    |||||||| |||| |||||    
T  37940186 tagcttcagcttcagtagc 37940204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 247 - 547
Target Start/End: Original strand, 37940099 - 37940402
Alignment:
Q  247 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttc 346  Q
    |||||||||||||  ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||    
T  37940099 cctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttc 37940198  T
Q  347 agtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggcttgacttttactgattctgtcagatcaacttcagtaaccacg 446  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||| | |||||| |  | |||||||||| |  |     
T  37940199 agtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgca 37940298  T
Q  447 gg---ttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtgactataggttcgtctt 543  Q
    ||   ||||||||||||||| ||||| |||||||| |||||||||  ||||||||||| ||| |||||||  ||||||||||| || |  ||||| ||||    
T  37940299 ggttcttcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttctt 37940398  T
Q  544 ttac 547  Q
    ||||    
T  37940399 ttac 37940402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 249 - 668
Target Start/End: Original strand, 37939699 - 37940118
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    ||||||||||||||||  |||||   ||||||||||| ||||   |||||||| |||||||| | |||||||||||| || |||||||  | ||||||||    
T  37939699 tcaacttcagtaaccaggggttc---ttttactgtttttgtaatttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcag 37939795  T
Q  349 tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggcttgacttttactgattctgtcagatcaacttcagtaaccacggg 448  Q
    || | | |||||| |||||| |||||||||| |  || | ||||||| |  |||| |   |||||||   ||||||  | |||||| ||||   ||| ||    
T  37939796 taactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctcaactacagttgtcacagg 37939895  T
Q  449 ttctt---ttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtgactataggttcgtctttt 545  Q
    |||||   |||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||||||  |||||||||||  | |  ||||| ||||||    
T  37939896 ttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttctttt 37939995  T
Q  546 accgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggtccttcttttacggtttctg 645  Q
    || |||||||| || || | |||||||||  | ||||| |||||||| ||||||||||  |||||| |||| |   ||||| | |||||||| |||||||    
T  37939996 actgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccgtttctg 37940095  T
Q  646 tagcttcaacttcggtagccaca 668  Q
    |||| |||||||| || ||||||    
T  37940096 tagcctcaacttcagttgccaca 37940118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 248 - 556
Target Start/End: Original strand, 37940145 - 37940456
Alignment:
Q  248 ctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttca 347  Q
    ||||||||||||| |||| |||||  ||||||||||||||||||  ||| |||||||||| |  |||||||||||||||||||||||||  | |||||||    
T  37940145 ctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttca 37940244  T
Q  348 gtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggcttgacttttactgattctgtcagatcaacttcagtaaccacgg 447  Q
    ||| |||||||||| |||||| | |||||||||   | |||||||||| |  |||| |   ||||||||| ||| ||    |||||||||||| ||||      
T  37940245 gtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagtagccacaa 37940344  T
Q  448 gttctt---ttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtgactataggttcgtcttt 544  Q
    ||||||   ||| |||||||||||| |||||||| ||| |||| | ||||||||||||| |||||| ||   ||||||| || || || ||||| |||||    
T  37940345 gttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttactatctctgcagtcgcaacttcggtaaccatgggttcttcttt 37940444  T
Q  545 taccgtttctgt 556  Q
     || ||||||||    
T  37940445 cactgtttctgt 37940456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 37940369 - 37940458
Alignment:
Q  247 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtag 336  Q
    ||||||||||||||||||| |||||  |||||||| | |||| || | ||||||| ||| ||| |||||||||||| || ||||||||||    
T  37940369 cctcaacttcagtaaccacgggttcttcttttactatctctgcagtcgcaacttcggtaaccatgggttcttctttcactgtttctgtag 37940458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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