View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5798-Insertion-4 (Length: 535)
Name: NF5798-Insertion-4
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5798-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Complemental strand, 43366906 - 43366391
Alignment:
| Q |
9 |
atttccgccatctccgtctgccttctccttcttttcatcatgctccctctcttcgctccttccccttttattgtaaatgctcttcatccttctacttcaa |
108 |
Q |
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| T |
43366906 |
atttcctccatctccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatccttctacttcaa |
43366807 |
T |
|
| Q |
109 |
ttacattcctcattccattctgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatcagcaatcccca |
208 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366806 |
ttacattcctcattccattttgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatcagcaatcccca |
43366707 |
T |
|
| Q |
209 |
tttcacattccggtaatcaaacaatgttctcaccttcnnnnnnnatgcattttttgttatgttgctaatatcttccttttgtttcttcgaatttgaagac |
308 |
Q |
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| T |
43366706 |
tttcacattccggtaatcaaacaatgttctcacctt---tttttattcattttttgttatgttgctaatatcttccttttgtttcttcgaatttgaagac |
43366610 |
T |
|
| Q |
309 |
aagtgaaggtacttacaagcatgatctatggaattcgaggaactcgcagcttttctctgcctgcagtaatgccggtgtcaactttgcaagtaaacttcat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43366609 |
aagtgaaggtacttacaagcatgatctatggaattcgaggaactcgcagcttttctctgcctgcagttatgccggtgtcaactttgcaagtaaacttcat |
43366510 |
T |
|
| Q |
409 |
cctagactcctagctagtccttttttcatctcatcaatttaattttgattgagtgtatttatttatatttctaattgttgcagaggctaatagcaaaact |
508 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366509 |
cctagactc----ctagtccttttttcatctcatcaatttaattttgattgagtgtatttatttatatttctaattgttgcagaggctaatagcaaaact |
43366414 |
T |
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| Q |
509 |
catccggaccgatacttgttaat |
531 |
Q |
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| T |
43366413 |
catccggaccgatacttgttaat |
43366391 |
T |
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