View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5798_low_1 (Length: 330)
Name: NF5798_low_1
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5798_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 2639097 - 2638789
Alignment:
| Q |
6 |
taagatggagacatgttttaaattaaacaaaagatgaaatgttgattccgagtatttgtcacaaacccctgcgatgcgagcaagattgataggtccacaa |
105 |
Q |
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| T |
2639097 |
taagatgaagacatgttttaaattaaacaaaagatgaaatgttgattccgagtatttgtcacaaacccctgcgatgcgagcaagattgataggtccacaa |
2638998 |
T |
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| Q |
106 |
attttttgtcacaaacccctgtgaagctgcatcaatgctcctctttgactcagaaggcactatcaattactcgagaatatatggctttagaacccaacga |
205 |
Q |
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| T |
2638997 |
attttttgtcacaaacccctgtgaagctgcatcaatgttcctctttgactcagaaggcactatcaattactcgagaatctatggctttagaacccaacga |
2638898 |
T |
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| Q |
206 |
aaaacatgaggtcatatccaacggagggcaggtaaacatgaccattggtgctataaactttggaaggacattctgtaccgttgtttcagcataaactttg |
305 |
Q |
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| T |
2638897 |
aaaacatgaggtcatatccaacggagggcaggtaaacatgaccattggtgctataaactttggaaggacattctataccgttgtttcagaataaactttg |
2638798 |
T |
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| Q |
306 |
gattattcc |
314 |
Q |
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| T |
2638797 |
gattattcc |
2638789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 2623226 - 2623165
Alignment:
| Q |
9 |
gatggagacatgttttaaattaaacaaaagatgaaatgttgattccgagtatttgtcacaaa |
70 |
Q |
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| T |
2623226 |
gatgaagacatgttttaaattaaacaaaaactgaaatgttgaatctgagtaattgttacaaa |
2623165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 2623153 - 2623109
Alignment:
| Q |
69 |
aacccctgcgatgcgagcaagattgataggtccacaaattttttg |
113 |
Q |
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| T |
2623153 |
aacccctgcaatgcgagcaagaacgataggtccacaaattttttg |
2623109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 2627107 - 2627059
Alignment:
| Q |
266 |
tggaaggacattctgtaccgttgtttcagcataaactttggattattcc |
314 |
Q |
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| T |
2627107 |
tggaaggacattctgtacagttgtttcagaataaaattttgattattcc |
2627059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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