View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5799-Insertion-1 (Length: 935)

Name: NF5799-Insertion-1
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5799-Insertion-1
NF5799-Insertion-1
[»] chr5 (3 HSPs)
chr5 (141-280)||(42981028-42981167)
chr5 (742-799)||(42434979-42435036)
chr5 (618-680)||(42980838-42980902)
[»] chr3 (3 HSPs)
chr3 (431-542)||(8390920-8391032)
chr3 (875-935)||(8390140-8390200)
chr3 (746-797)||(8390282-8390333)
[»] chr6 (2 HSPs)
chr6 (9-71)||(1065127-1065189)
chr6 (24-95)||(20820866-20820933)
[»] chr7 (1 HSPs)
chr7 (39-86)||(23658316-23658363)
[»] chr4 (1 HSPs)
chr4 (742-799)||(28293822-28293879)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 141 - 280
Target Start/End: Complemental strand, 42981167 - 42981028
Alignment:
Q  141 gaccaagtataaataattttggggtagccatagttacccgatcatttcaaaaggattcgtccctattgataaccacgtttacaaaaatcactttaagtaa 240  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||| ||||||    
T  42981167 gaccaagtataaataattttggggtagccaaagctacccgatcatttcaaaaggattcgtccttgttgatagccacgtttacgaaaatcacttaaagtaa 42981068  T
Q  241 atgatattggaaaaatatatcgatttattaaatttatatt 280  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42981067 atgatattggaaaaatatatcgatttattaaatttatatt 42981028  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 742 - 799
Target Start/End: Complemental strand, 42435036 - 42434979
Alignment:
Q  742 aagcccatacattaggccaaaataacctatgttatttcagtaaccctaaataaataca 799  Q
    ||||||||||| |||||| ||||| |||| |||||||| |||||||||||||||||||    
T  42435036 aagcccatacagtaggcctaaatagcctaagttatttctgtaaccctaaataaataca 42434979  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 618 - 680
Target Start/End: Complemental strand, 42980902 - 42980838
Alignment:
Q  618 gatccaatattaactt-aggggtccatata-ttattttatattttgttaagttactatatttttt 680  Q
    |||||||||||||||| || |||||||||  ||||||||||||||| ||||||||||| ||||||    
T  42980902 gatccaatattaactttagaggtccatatggttattttatattttgctaagttactatttttttt 42980838  T

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Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 431 - 542
Target Start/End: Complemental strand, 8391032 - 8390920
Alignment:
Q  431 aacactcgtataaactagtatccattaggtaaaaaacatt-attgtcaaagattcactttgttacagtaaattttctttaacaatatttgagggtgttaa 529  Q
    ||||||||||||||||| |||||||||||| | ||||||| ||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |    
T  8391032 aacactcgtataaactactatccattaggtcacaaacatttattctcagagatttactttgtgacagtaaattttctttaacaatatttgagggtgttga 8390933  T
Q  530 gagcatatgtatt 542  Q
    |||||||| ||||    
T  8390932 gagcatatttatt 8390920  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 875 - 935
Target Start/End: Complemental strand, 8390200 - 8390140
Alignment:
Q  875 gtcgatccttatctcatccattatttcyctatttgcaccatttcttctatcgatcctatct 935  Q
    ||||||| ||||||||||||||||||| |||||||||  ||||||||||||||| ||||||    
T  8390200 gtcgatctttatctcatccattatttctctatttgcataatttcttctatcgatgctatct 8390140  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 797
Target Start/End: Complemental strand, 8390333 - 8390282
Alignment:
Q  746 ccatacattaggccaaaataacctatgttatttcagtaaccctaaataaata 797  Q
    |||||||||||||| ||||| | || |||||||| |||||||||||||||||    
T  8390333 ccatacattaggcccaaatagcttaagttatttcggtaaccctaaataaata 8390282  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 1065189 - 1065127
Alignment:
Q  9 catttatcttgtcttaagttagctttattaatatatatactttcttcaaagttttgccacacc 71  Q
    ||||||| ||||| |||||||| ||||||| || ||||||||||||||| |||||||||||||    
T  1065189 catttattttgtcataagttagatttattagtacatatactttcttcaatgttttgccacacc 1065127  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 20820933 - 20820866
Alignment:
Q  24 aagttagctttattaatatatatactttcttcaaagttttgccacaccggtatcgaaagtctgagtccgccc 95  Q
    |||||||||||||||  |||| ||||||||||||||  ||||||||||  |||| |||||||| ||||||||    
T  20820933 aagttagctttatta--atatgtactttcttcaaag--ttgccacaccaatatcaaaagtctgggtccgccc 20820866  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 23658316 - 23658363
Alignment:
Q  39 atatatatactttcttcaaagttttgccacaccggtatcgaaagtctg 86  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||    
T  23658316 atatatatactttcttcaaagttttgtctcacctgtatcgaaagtctg 23658363  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 742 - 799
Target Start/End: Original strand, 28293822 - 28293879
Alignment:
Q  742 aagcccatacattaggccaaaataacctatgttatttcagtaaccctaaataaataca 799  Q
    ||||||||||| | |||| ||||| |||||||| |||| |||||||||||||||||||    
T  28293822 aagcccatacagtgggcccaaatagcctatgttgtttctgtaaccctaaataaataca 28293879  T

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