View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5799-Insertion-2 (Length: 928)
Name: NF5799-Insertion-2
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799-Insertion-2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 12 - 647
Target Start/End: Complemental strand, 35148797 - 35148156
Alignment:
| Q |
12 |
ttgattaacttaattaattaaatctaaattaccagttatatacacctttatgaaccaagttatagttaagaataatgattgcacagaaggtgcaagcgtg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35148797 |
ttgattaacttaattaattaaatctaaattaccagttatatacacctttatgaaccaagttatagttaagaataatgattgcacagaaggtgcaagcgtg |
35148698 |
T |
|
| Q |
112 |
gtgttctaggccacgacatatatcaaaataaatccagatgctattcaggcttcactcaatctattttccatccaaaagttgggcttgaagcaccaagatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35148697 |
gtgttctaggccacgacatatatcaaaataaatccagatgctattcaggcttcaccca-tctattttccatccaaaagttgggcttgaagcaccaagatc |
35148599 |
T |
|
| Q |
212 |
cttcatctgtaatgcttcataagcatagtttcttttttggtcctaattgttgcgacaaccaatcctatatatttttcattgcatcatttcaccaaatttg |
311 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35148598 |
cttcatctggaatgcttcataagcatagtttcttttttggtcctaattgttgcgacaaccaatcctatatatttttcattgcatcatttcaccaaatttg |
35148499 |
T |
|
| Q |
312 |
tttgttgccttacaactaaagacgc-------attttaagcctcaggattgttacacatgttcttgatgaaccgactttgcacaatttgtttttagttcc |
404 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35148498 |
tttgttgccttacaactaaagacgcagttcctattttaagcctcaggattgttacacatgttcttgatgaaccgactttgcacaatttgtttttagttcc |
35148399 |
T |
|
| Q |
405 |
ttcgtacaacttcaaattgatttatataaattcattgctataaacatatacccattccattattttatttactcagtacttcatcactttggacatcagt |
504 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35148398 |
ttcgtttaacttcaaattgatttatataaattcattgctataaacatatacccattccattattttatttactcagtacttcatcactttggacatcagt |
35148299 |
T |
|
| Q |
505 |
tagtctttgaggatgactttgaagacagatgatgttcagactttgtagtcctcatcttgatatagtctgttatctgctcagatatttgaaaggcacacat |
604 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35148298 |
tactctttgaggaagactttgaagacagatgatgttcagactttgtagtcctcatcttgatatagtctgttatctgctcagatatttgaaagacacacat |
35148199 |
T |
|
| Q |
605 |
gcctatgatctcctattttctgctactccattcttacacttgc |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35148198 |
gcctatgatctcctattttctgctactccattcttacacttgc |
35148156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 679 - 921
Target Start/End: Complemental strand, 35148157 - 35147905
Alignment:
| Q |
679 |
gccacatgtgtagacactggacacacacacctgcagatgcactacatcttaccaaagccatgttttcttagaaatttacttttgtcatt---------ca |
769 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
35148157 |
gccacatgtatagacactggacacacacacctgcagatgctctacatcttaccaaagccatgttttcttagaaatttacttttgtcattgaatccaagca |
35148058 |
T |
|
| Q |
770 |
atctactgttagatgttgatttgtgccattgtggaggctgaatactgtctctggcagccgtggctagtgaattacctttgctgttattatatcttttcct |
869 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35148057 |
atctactgttagatgttgatttgtgccattgtggaggctgactactgtctctggcagccgtggctagtgaattacctttgctgttattatatcttttcct |
35147958 |
T |
|
| Q |
870 |
at-acagcgtttataacttattaactgggtaggtcaaccttgttcggattaag |
921 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
35147957 |
ataacagcgtttataacttaataactgggtaggtcaaccttgttcggactaag |
35147905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 547 - 757
Target Start/End: Complemental strand, 35200848 - 35200642
Alignment:
| Q |
547 |
ttgtagtcctcatcttgatatagtctgttatctgctcagatatttgaaaggcacacatgcctatgatctcctattttctgctactccattcttacacttg |
646 |
Q |
| |
|
||||||||||| |||||||||||||| |||| || |||||||||||||| | |||||| ||| | | | ||||||||||| ||| | | ||||| |||| |
|
|
| T |
35200848 |
ttgtagtcctcgtcttgatatagtctattatatgttcagatatttgaaatacgcacatgtctacggtgttctattttctgcaacttcttccttacccttg |
35200749 |
T |
|
| Q |
647 |
cagctgcagagtcctatgtaaaagctgactaggccacatgtgtagacactggacacacacacctgcagatgcactacatcttaccaaagccatgttttct |
746 |
Q |
| |
|
|||||| ||| |||||| | ||||||||||||||| || |||||||||||||||||| | ||||||||||||||||||||||| || |||||||| |
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|
| T |
35200748 |
cagctgaaga--cctatgcagtagctgactaggccacttgcatagacactggacacacaccc--gcagatgcactacatcttaccaataccgtgttttct |
35200653 |
T |
|
| Q |
747 |
tagaaatttac |
757 |
Q |
| |
|
||||||||||| |
|
|
| T |
35200652 |
tagaaatttac |
35200642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 567 - 844
Target Start/End: Complemental strand, 35191294 - 35191010
Alignment:
| Q |
567 |
tagtctgttatctgctcagatatttgaaaggcacacatgcctatgatctcctattttctgctactccattcttacacttgcagctgcagagtcctatgta |
666 |
Q |
| |
|
|||||| | |||| ||||||||||||| ||||||| ||| ||| | ||| ||||||| || ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
35191294 |
tagtctataatctcctcagatatttgataggcacatatggctaaggtctactattttttggaacttcatccttacacttgcagctgcaggaa--tatgcg |
35191197 |
T |
|
| Q |
667 |
aaagctgactaggccacatgtgtagacac-tggacacacacacctgcagatgcactacatcttaccaaagccatgttttcttagaaatttacttttgtc- |
764 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||| || ||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
35191196 |
gaagctgactaggccacatgcgtagatacctggacacagac--ctgcatttgcactacatcttaccaataccatgttttcttaggaatttacttttgtcg |
35191099 |
T |
|
| Q |
765 |
----attca----atctactgttagatgttgatttgtgccattgtggaggctgaata-ctgtctctggcagccgtggctagtgaattac |
844 |
Q |
| |
|
|| || ||||||||||| ||||| ||||||||||||||||||| ||| || ||||| ||||||||||||| |||||||||| |
|
|
| T |
35191098 |
tagaatccaagctatctactgttaaatgttcatttgtgccattgtggaggttgagtacctgtccttggcagccgtggccagtgaattac |
35191010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 567 - 872
Target Start/End: Complemental strand, 35208931 - 35208622
Alignment:
| Q |
567 |
tagtctgttatctgctcagatatttgaaaggcacacatgcctatgatctcctattttctgctactccattcttacacttgcagctgcagagtcctatgta |
666 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||| ||| | |||||||||||||| ||| ||| ||||||||||||||||| || |||| |
|
|
| T |
35208931 |
tagtctattatctgctcagatatttgacaggcacatatggctacggtctcctattttctgaaacttcatccttacacttgcagctgc--aggaatatgcg |
35208834 |
T |
|
| Q |
667 |
aaagctgactaggccacatgtgtagaca-ctggacacacacacctgcagatgcactacatcttaccaaagccatgttttcttagaaatttacttttgtca |
765 |
Q |
| |
|
|||||||||| ||||||| ||||| | |||| ||||| |||||| ||||||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
35208833 |
gaagctgactacaccacatgcgtagatacctgg--acacaggcctgcatttgcactaaatcttaccaataccatgttttcttttgaatttacttttgtca |
35208736 |
T |
|
| Q |
766 |
t---------tcaatctactgttagatgttgatttgtgccattgtggaggctgaata-ctgtctctggcagccgtggctagtgaattacctttgctgtta |
855 |
Q |
| |
|
| ||||||||||||||| || ||||||||||||||||||| ||| || ||||| ||||||| ||||| |||||| |||||| || || |
|
|
| T |
35208735 |
tggaatcaaaccaatctactgttagacattcatttgtgccattgtggaggatgagtatatgtctttggcagcagtggccagtgaactaccttggc---ta |
35208639 |
T |
|
| Q |
856 |
ttatatcttttcctata |
872 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35208638 |
ttatatcttttcctata |
35208622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 389 - 542
Target Start/End: Complemental strand, 35201249 - 35201096
Alignment:
| Q |
389 |
atttgtttttagttccttcgtacaacttcaaattgatttatataaattcattgctataaacatatacccattccattattttatttactcagtacttcat |
488 |
Q |
| |
|
||||||||| ||||||| | ||| ||||||| ||||||||||||||||||||||||| | ||||| ||| ||||||||||| || ||| |||||| |
|
|
| T |
35201249 |
atttgttttcagttcctatattcaagttcaaatcgatttatataaattcattgctataagcttatacttattttgttattttatttgctgagtccttcat |
35201150 |
T |
|
| Q |
489 |
cactttggacatcagttagtctttgaggatgactttgaagacagatgatgttca |
542 |
Q |
| |
|
|| ||||| ||| | ||||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
35201149 |
caacaaggacagcagatggtctttgaggaagactatgaagactgatgatgttca |
35201096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 35209366 - 35209302
Alignment:
| Q |
239 |
gtttcttt-tttggtcctaattgttgcgacaaccaatcctatatatttttcattgcatcatttca |
302 |
Q |
| |
|
|||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35209366 |
gtttctttgtttggtcctagtttctgcgacaaacaatcctatatatttttcattgcatcatttca |
35209302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 35221231 - 35221160
Alignment:
| Q |
394 |
tttttagttccttcgtacaacttcaaattgatttatataaattcattgctataaacatatacccattccatt |
465 |
Q |
| |
|
|||| ||||||||| | ||| ||||||||||||| | | ||||||||||||||||| |||||| |||||||| |
|
|
| T |
35221231 |
ttttcagttccttcattcaagttcaaattgatttctcttaattcattgctataaacttatacctattccatt |
35221160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 601
Target Start/End: Complemental strand, 35271468 - 35271423
Alignment:
| Q |
556 |
tcatcttgatatagtctgttatctgctcagatatttgaaaggcaca |
601 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
35271468 |
tcatcttgatacagtctattatctgctcagatatttgaaatgcaca |
35271423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 35253132 - 35253085
Alignment:
| Q |
553 |
tcctcatcttgatatagtctgttatctgctcagatatttgaaaggcac |
600 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
35253132 |
tcctcatctccatatagtctattatctgctcagatatttgaaatgcac |
35253085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 35191866 - 35191788
Alignment:
| Q |
234 |
gcatagtttcttt-tttggtcctaattgttgcgacaaccaatcctatatat-ttttcattgcatcatttcaccaaattt |
310 |
Q |
| |
|
||||||||||||| |||||||||| ||| | |||| | ||||||||||||| ||||| ||||| |||||||||| |||| |
|
|
| T |
35191866 |
gcatagtttctttatttggtcctagttgctccgaccaacaatcctatatattttttcgttgcaccatttcaccacattt |
35191788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 601
Target Start/End: Complemental strand, 35264048 - 35264006
Alignment:
| Q |
559 |
tcttgatatagtctgttatctgctcagatatttgaaaggcaca |
601 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
35264048 |
tcttgatacagtctattatctgctcagatatttgaaatgcaca |
35264006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 659 - 705
Target Start/End: Complemental strand, 35271387 - 35271341
Alignment:
| Q |
659 |
cctatgtaaaagctgactaggccacatgtgtagacactggacacaca |
705 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
35271387 |
cctatgtagaagcttactaggccacatgtgtggacactggactcaca |
35271341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 40811921 - 40811883
Alignment:
| Q |
187 |
aagttgggcttgaagcaccaagatccttcatctgtaatg |
225 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
40811921 |
aagttcggcttgaagcaccaagatcattcatctgtaatg |
40811883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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