View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5799-Insertion-4 (Length: 523)

Name: NF5799-Insertion-4
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5799-Insertion-4
NF5799-Insertion-4
[»] chr7 (2 HSPs)
chr7 (142-519)||(43939308-43939701)
chr7 (9-98)||(43939113-43939202)
[»] chr1 (4 HSPs)
chr1 (142-257)||(32626905-32627015)
chr1 (142-256)||(24489802-24489911)
chr1 (142-256)||(24498136-24498245)
chr1 (142-256)||(24485307-24485416)
[»] chr5 (2 HSPs)
chr5 (142-256)||(34289973-34290082)
chr5 (142-256)||(34296607-34296716)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 142 - 519
Target Start/End: Original strand, 43939308 - 43939701
Alignment:
Q  142 tacgctccactaatagtaggagttagttttctatactgtgtatcaatccgtaactatttata----------------tatattgccatacacaatggcc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||                ||||||||||||||| ||||||    
T  43939308 tacgctccactaatagtaggagttagttttctatactgtgtatcattctgtaactatatatatatatatatatatatatatattgccatacactatggcc 43939407  T
Q  226 atcagaatcatagaattatcgttcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcg 325  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939408 atcagaatcattgaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcg 43939507  T
Q  326 gtaactctaagacttggccgtttgatttaaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacga 425  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939508 gtaactctgagacttggccgtttgatttgaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacga 43939607  T
Q  426 acaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagactcttgttaat 519  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  43939608 tcaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagaattttgttaat 43939701  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 43939113 - 43939202
Alignment:
Q  9 aatacatcatatccctagaaagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagataaattccattttgatc 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939113 aatacatcatatccctagaaagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagataaattccattttgatc 43939202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 32627015 - 32626905
Alignment:
Q  142 tacgctccactaatagtaggagttagttttctatactgtgtatcaatccgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  32627015 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 32626922  T
Q  241 ttatcgttcccttttaa 257  Q
    ||||| |||||||||||    
T  32626921 ttatcattcccttttaa 32626905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 24489911 - 24489802
Alignment:
Q  142 tacgctccactaatagtaggagttagttttctatactgtgtatcaatccgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  24489911 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 24489818  T
Q  241 ttatcgttccctttta 256  Q
    ||||| ||||||||||    
T  24489817 ttatcattccctttta 24489802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 24498245 - 24498136
Alignment:
Q  142 tacgctccactaatagtaggagttagttttctatactgtgtatcaatccgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  24498245 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 24498152  T
Q  241 ttatcgttccctttta 256  Q
    ||||| ||||||||||    
T  24498151 ttatcattccctttta 24498136  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 24485416 - 24485307
Alignment:
Q  142 tacgctccactaatagtaggagttagttttctatactgtgtatcaatccgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||      ||||||||||||||||  |||||||||||  || || |||    
T  24485416 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtgtcaattgaa 24485323  T
Q  241 ttatcgttccctttta 256  Q
    ||||| ||||||||||    
T  24485322 ttatcattccctttta 24485307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 34289973 - 34290082
Alignment:
Q  142 tacgctccactaatagtaggagttagttttctatactgtgtatcaatccgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  34289973 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 34290066  T
Q  241 ttatcgttccctttta 256  Q
    ||||| ||||||||||    
T  34290067 ttatcattccctttta 34290082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 34296607 - 34296716
Alignment:
Q  142 tacgctccactaatagtaggagttagttttctatactgtgtatcaatccgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  34296607 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 34296700  T
Q  241 ttatcgttccctttta 256  Q
    ||||| ||||||||||    
T  34296701 ttatcattccctttta 34296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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