View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5799-Insertion-6 (Length: 275)
Name: NF5799-Insertion-6
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 30360817 - 30361073
Alignment:
| Q |
12 |
cggaccttctctggaactgggattgggtccctgcaaggtacattcagatgaaaagaaatttaggctcactacttgtatcatcattgaaaatatgcatgct |
111 |
Q |
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| T |
30360817 |
cggaccttctctggaactgggattgggtccctgcaaggtacattcagatgaaaagaaatttaggctcactacttgtatcatcattgaaaatatgcatgct |
30360916 |
T |
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| Q |
112 |
tcgaaaagnnnnnnnngtcctggttgttaaaatttctttggaagaaaatacgcatgcttnnnnnnngtcttgattgctcactcttttaatactggttgcg |
211 |
Q |
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|||||| | |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30360917 |
tcgaaatgaaaaaaaagtcctggttgtttaaatttcttttgaagaaaatacgcatgcttaaaaaaagtcttgattgctcactcttttaatactggttgcg |
30361016 |
T |
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| Q |
212 |
ccttaaattttctcatctctgcttctacactctccattctaagtctttcttcttgtt |
268 |
Q |
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|||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |
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| T |
30361017 |
ccttaaattttctcatctgtgcttcttgtctttccattctaagtctttcttcttgtt |
30361073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 19916216 - 19916321
Alignment:
| Q |
12 |
cggaccttctctggaactgggattgggtccctgcaaggtacattcagatgaaaagaaatttaggctcactacttgtatcatcattgaaaatatgcatgct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19916216 |
cggaccttctctggaactgggattgggtccctgcaaggtacattcatatgaaaagaaatttaggctcactacttgtatcatcattgaaaatatgcatgct |
19916315 |
T |
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| Q |
112 |
tcgaaa |
117 |
Q |
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|||||| |
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| T |
19916316 |
tcgaaa |
19916321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 19916391 - 19916469
Alignment:
| Q |
188 |
ctcactcttttaatactggttgcgccttaaattttctcatctctgcttctacactctccattctaagtctttcttcttgtt |
268 |
Q |
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||||||||||| |||||| | ||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||| |
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| T |
19916391 |
ctcactctttt--tactggcagtgccttaaattttctcatctgtgcttcttctctttccattctaagtctttcttcttgtt |
19916469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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