View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5799_high_3 (Length: 422)
Name: NF5799_high_3
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 25 - 414
Target Start/End: Original strand, 36982946 - 36983342
Alignment:
| Q |
25 |
tacataactcgctactagttctatcttacttattttcctaatattcttgttgaatgcaggaatcaaacagtttgctcctttcaagacaagtagtaataaa |
124 |
Q |
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| T |
36982946 |
tacataactcgctactagttctatcttacttattttcctaatattcttgttgaatgcaggaatcaaacagtttgctcctttcaagacaagtagtaataaa |
36983045 |
T |
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| Q |
125 |
tcaaaagcttattaagacatacctcagaagtggttggtcctgattctcccatttacatacttgttcaatttaaggatcaagtcttaagcaaactatggtc |
224 |
Q |
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| T |
36983046 |
tcaaaagcttataaagacatacctcagaagtggttggtcctgattctcccatttacatacttgttcaatttaaggatcaagtcttaagcaaactatggtc |
36983145 |
T |
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| Q |
225 |
ttctcaaattc-------aagtgcccaactagttgaattttttgtaaaactcttgtgcttctttgatannnnnnngagttaaatacagatatannnnnnn |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
36983146 |
ttctcaaattcaatgttgaagtgcccaactagttgaattttttgtaaaactcttgtgcttctttgatatttttttgagttaaatacagattttttttttt |
36983245 |
T |
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| Q |
318 |
gttccaaacagtcacaaatatgttttatatttttaaagcacgaaaagttttaaaataaaactaaattgtactgttaacaaccttattgatattcttc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36983246 |
gttccaaacagtcacaaatatgttttatatttttaaagcacgaaaagttttaaaataaaactaaattgtactgttaacagccttattgatattcttc |
36983342 |
T |
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