View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5799_high_7 (Length: 306)
Name: NF5799_high_7
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 5194794 - 5194877
Alignment:
| Q |
185 |
gcattctcatccaaagatggttatggactttgtctagccatttcctctttgacgcgatagtatgccgacctcaatgagtaaatg |
268 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5194794 |
gcattctcatccaaaggtggttatggactttgtctagccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatg |
5194877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 5172242 - 5172314
Alignment:
| Q |
18 |
caccaatgtgatactggctattgttgaaacccaatggtgaaattaaccggagcttttgtatttcctaacatag |
90 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5172242 |
caccaatgtgatattggctattgttgaaacccaatggtgaaatgaaccggagcttttgtatttcctaacatag |
5172314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 5181439 - 5181522
Alignment:
| Q |
185 |
gcattctcatccaaagatggttatggactttgtctagccatttcctctttgacgcgatagtatgccgacctcaatgagtaaatg |
268 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
5181439 |
gcattctcatccaaaggtggttatggactttgactagccatttcctctttgacgcgataggttgccgacttcaatgagtaaatg |
5181522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 4843377 - 4843294
Alignment:
| Q |
185 |
gcattctcatccaaagatggttatggactttgtctagccatttcctctttgacgcgatagtatgccgacctcaatgagtaaatg |
268 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
4843377 |
gcattttcatccaaagatggttatcgattttgtctagtcattttctctttgacgcgatagtttgccgacttcaatgagtaaatg |
4843294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 5159213 - 5159294
Alignment:
| Q |
187 |
attctcatccaaagatggttatggactttgtctagccatttcctctttgacgcgatagtatgccgacctcaatgagtaaatg |
268 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
5159213 |
attctcatccaaagatggttatcgattttgtctagtcattttctctttgacgcgataggttgccaacttcaatgagtaaatg |
5159294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University