View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5799_high_8 (Length: 275)
Name: NF5799_high_8
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 30361067 - 30360817
Alignment:
| Q |
1 |
aagaaagacttagaatggaaagagaagaagcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgc |
100 |
Q |
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| T |
30361067 |
aagaaagacttagaatggaaagacaagaagcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgc |
30360968 |
T |
|
| Q |
101 |
gtattttcttccaaagaaattttaacaaccaggacnnnnnnnncttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttt |
200 |
Q |
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||||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30360967 |
gtattttcttcaaaagaaatttaaacaaccaggacttttttttcatttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttt |
30360868 |
T |
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| Q |
201 |
tcatctgaatgtaccttgcagggacccaatcccagttccagagaaggtccg |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30360867 |
tcatctgaatgtaccttgcagggacccaatcccagttccagagaaggtccg |
30360817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 19916463 - 19916216
Alignment:
| Q |
1 |
aagaaagacttagaatggaaagagaagaagcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagacttttttt-aagcatg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| | ||| |||||||||| ||||||| |
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| T |
19916463 |
aagaaagacttagaatggaaagagaagaagcacagatgagaaaatttaaggcactgccagta--aaaagagtgagaattcaggacttttttttaagcatg |
19916366 |
T |
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| Q |
100 |
cgtattttcttccaaagaaattttaacaaccaggacnnnnnnnn-cttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttct |
198 |
Q |
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|||| |||||| |||||||||| ||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19916365 |
cgtactttctttgaaagaaatttaaac---caatactttttttatcctttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttct |
19916269 |
T |
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| Q |
199 |
tttcatctgaatgtaccttgcagggacccaatcccagttccagagaaggtccg |
251 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19916268 |
tttcatatgaatgtaccttgcagggacccaatcccagttccagagaaggtccg |
19916216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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