View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5799_low_1 (Length: 599)
Name: NF5799_low_1
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 25 - 583
Target Start/End: Original strand, 36982946 - 36983511
Alignment:
| Q |
25 |
tacataactcgctactagttctatcttacttattttcctaatattcttgttgaatgcaggaatcaaacagtttgctcctttcaagacaagtagtaataaa |
124 |
Q |
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| T |
36982946 |
tacataactcgctactagttctatcttacttattttcctaatattcttgttgaatgcaggaatcaaacagtttgctcctttcaagacaagtagtaataaa |
36983045 |
T |
|
| Q |
125 |
tcaaaagcttattaagacatacctcagaagtggttggtcctgattctcccatttacatacttgttcaatttaaggatcaagtcttaagcaaactatggtc |
224 |
Q |
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| T |
36983046 |
tcaaaagcttataaagacatacctcagaagtggttggtcctgattctcccatttacatacttgttcaatttaaggatcaagtcttaagcaaactatggtc |
36983145 |
T |
|
| Q |
225 |
ttctcaaattcaa-------gtgcccaactagttgaattttttgtaaaactcttgtgcttctttgatannnnnnngagttaaatacagatatannnnnnn |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
36983146 |
ttctcaaattcaatgttgaagtgcccaactagttgaattttttgtaaaactcttgtgcttctttgatatttttttgagttaaatacagattttttttttt |
36983245 |
T |
|
| Q |
318 |
gttccaaacagtcacaaatatgttttatatttttaaagcacgaaaagttttaaaataaaactaaattgtactgttaacaaccttattgatattcttccaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36983246 |
gttccaaacagtcacaaatatgttttatatttttaaagcacgaaaagttttaaaataaaactaaattgtactgttaacagccttattgatattcttccaa |
36983345 |
T |
|
| Q |
418 |
tcaatactgaaatcatttgagatgatggaagacgacaattttcaaaaccacaatcttattgatattctcctgtacttcatgtttcataggataggaatga |
517 |
Q |
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| T |
36983346 |
tcaatactgaaatcatttgagatgatggaagacgacaattttcaaaaccacaatcttattgatattctcctgtacttcatgattcataggataggaatga |
36983445 |
T |
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| Q |
518 |
atatgttttacactccacaaaagcgtgtgatgattatgtaacagaaaatgattatcctaattaata |
583 |
Q |
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| T |
36983446 |
agatgttttacactccacaaaagcgtgtgatgattatgtaacagaaaattattatcctaattaata |
36983511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 578
Target Start/End: Complemental strand, 11496582 - 11496537
Alignment:
| Q |
533 |
cacaaaagcgtgtgatgattatgtaacagaaaatgattatcctaat |
578 |
Q |
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| T |
11496582 |
cacaaaaccgtatgatgattatgtaccagaaaatgattatcgtaat |
11496537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 578
Target Start/End: Complemental strand, 11503909 - 11503864
Alignment:
| Q |
533 |
cacaaaagcgtgtgatgattatgtaacagaaaatgattatcctaat |
578 |
Q |
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| T |
11503909 |
cacaaaaccgtatgatgattatgtaccagaaaatgattatcgtaat |
11503864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 578
Target Start/End: Complemental strand, 11511303 - 11511258
Alignment:
| Q |
533 |
cacaaaagcgtgtgatgattatgtaacagaaaatgattatcctaat |
578 |
Q |
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| T |
11511303 |
cacaaaaccgtatgatgattatgtaccagaaaatgattatcgtaat |
11511258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 578
Target Start/End: Complemental strand, 11518679 - 11518634
Alignment:
| Q |
533 |
cacaaaagcgtgtgatgattatgtaacagaaaatgattatcctaat |
578 |
Q |
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| T |
11518679 |
cacaaaaccgtatgatgattatgtaccagaaaatgattatcgtaat |
11518634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 578
Target Start/End: Complemental strand, 11526084 - 11526039
Alignment:
| Q |
533 |
cacaaaagcgtgtgatgattatgtaacagaaaatgattatcctaat |
578 |
Q |
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| T |
11526084 |
cacaaaaccgtatgatgattatgtaccagaaaatgattatcgtaat |
11526039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 578
Target Start/End: Complemental strand, 11533492 - 11533447
Alignment:
| Q |
533 |
cacaaaagcgtgtgatgattatgtaacagaaaatgattatcctaat |
578 |
Q |
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| T |
11533492 |
cacaaaaccgtatgatgattatgtaccagaaaatgattatcgtaat |
11533447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 578
Target Start/End: Complemental strand, 11540939 - 11540894
Alignment:
| Q |
533 |
cacaaaagcgtgtgatgattatgtaacagaaaatgattatcctaat |
578 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||||| |||| |
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| T |
11540939 |
cacaaaaccgtatgatgattatgtaccagaaaatgattatcgtaat |
11540894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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