View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5799_low_10 (Length: 245)
Name: NF5799_low_10
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 42981075 - 42981167
Alignment:
| Q |
5 |
aagtgatttttgtaaacgtggttatcaatagggacgaatccttttgaaatgatcgggtaactatggctaccccaaaattatttatacttggtc |
97 |
Q |
| |
|
|||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
42981075 |
aagtgattttcgtaaacgtggctatcaacaaggacgaatccttttgaaatgatcgggtagctttggctaccccaaaattatttatacttggtc |
42981167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 1065127 - 1065189
Alignment:
| Q |
167 |
ggtgtggcaaaactttgaagaaagtatatatattaataaagctaacttaagacaagataaatg |
229 |
Q |
| |
|
||||||||||||| ||||||||||||||| || ||||||| |||||||| ||||| ||||||| |
|
|
| T |
1065127 |
ggtgtggcaaaacattgaagaaagtatatgtactaataaatctaacttatgacaaaataaatg |
1065189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 20820866 - 20820933
Alignment:
| Q |
143 |
gggcggactcagactttcgataccggtgtggcaaaactttgaagaaagtatatatattaataaagctaactt |
214 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
20820866 |
gggcggacccagacttttgatattggtgtggcaa--ctttgaagaaagtacatat--taataaagctaactt |
20820933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 23658363 - 23658316
Alignment:
| Q |
152 |
cagactttcgataccggtgtggcaaaactttgaagaaagtatatatat |
199 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
23658363 |
cagactttcgatacaggtgagacaaaactttgaagaaagtatatatat |
23658316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University