View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5799_low_4 (Length: 397)
Name: NF5799_low_4
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 37704493 - 37704859
Alignment:
| Q |
1 |
tctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagt |
100 |
Q |
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| T |
37704493 |
tctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagt |
37704592 |
T |
|
| Q |
101 |
ttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataaca |
200 |
Q |
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| T |
37704593 |
ttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataaca |
37704692 |
T |
|
| Q |
201 |
aattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagactt |
300 |
Q |
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| T |
37704693 |
aattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagactt |
37704792 |
T |
|
| Q |
301 |
cttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcgg |
367 |
Q |
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| T |
37704793 |
cttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcgg |
37704859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 37699014 - 37699349
Alignment:
| Q |
1 |
tctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagt |
100 |
Q |
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| T |
37699014 |
tctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatagaaaagt |
37699113 |
T |
|
| Q |
101 |
ttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataagat |
196 |
Q |
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| T |
37699114 |
ttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataataagat |
37699213 |
T |
|
| Q |
197 |
aacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttagaatcggag |
290 |
Q |
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||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||| |
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| T |
37699214 |
aacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagcaacggag |
37699313 |
T |
|
| Q |
291 |
acttagacttcttcaaatgtacatactttaaagagc |
326 |
Q |
| |
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|||||||||||||||| || ||| |||||||||||| |
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| T |
37699314 |
acttagacttcttcaactgaacagactttaaagagc |
37699349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 37437584 - 37437823
Alignment:
| Q |
27 |
ggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatat |
126 |
Q |
| |
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|||||||||||||||| | |||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
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| T |
37437584 |
ggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacat |
37437683 |
T |
|
| Q |
127 |
cttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcac |
222 |
Q |
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| T |
37437684 |
attggaagaccaagacttttcgaacgtaattagc----aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcag |
37437779 |
T |
|
| Q |
223 |
agtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa |
266 |
Q |
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| T |
37437780 |
aatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa |
37437823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 37698732 - 37698864
Alignment:
| Q |
83 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta----gcacgaaagttggaatctta |
177 |
Q |
| |
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|||| |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta |
37698831 |
T |
|
| Q |
178 |
tttcaagttgtgataagataacaaattcattta |
210 |
Q |
| |
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| T |
37698832 |
ttgcaagttgtgataagataacaaattcattta |
37698864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 90 - 326
Target Start/End: Complemental strand, 16841109 - 16840857
Alignment:
| Q |
90 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
188 |
Q |
| |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
189 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaa |
272 |
Q |
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| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaa |
16840911 |
T |
|
| Q |
273 |
ttgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
326 |
Q |
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||||||||||| |||||||||||||||| |||| | | ||||||||||||||| |
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| T |
16840910 |
atgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc |
16840857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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