View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5799_low_5 (Length: 337)
Name: NF5799_low_5
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 35148525 - 35148192
Alignment:
| Q |
1 |
tttcattgcatcatttcaccaaatttgtttgttgccttacaactaaagacgca-------ttttaagcctcaggattgttacacatgttcttgatgaacc |
93 |
Q |
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| T |
35148525 |
tttcattgcatcatttcaccaaatttgtttgttgccttacaactaaagacgcagttcctattttaagcctcaggattgttacacatgttcttgatgaacc |
35148426 |
T |
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| Q |
94 |
gactttgcacaatttgtttttagttccttcgtacaacttcaaattgatttatataaattcattgctataaacatatacccattccattattttatttact |
193 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35148425 |
gactttgcacaatttgtttttagttccttcgtttaacttcaaattgatttatataaattcattgctataaacatatacccattccattattttatttact |
35148326 |
T |
|
| Q |
194 |
cagtacttcatcactttggacatcagttagtctttgaggatgactttgaagacagatgatgttcagactttgtagtcctcatcttgatatagtctgttat |
293 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35148325 |
cagtacttcatcactttggacatcagttactctttgaggaagactttgaagacagatgatgttcagactttgtagtcctcatcttgatatagtctgttat |
35148226 |
T |
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| Q |
294 |
ctgctcagatatttgaaaggcacacatgcctatg |
327 |
Q |
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| T |
35148225 |
ctgctcagatatttgaaagacacacatgcctatg |
35148192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 35201249 - 35201096
Alignment:
| Q |
105 |
atttgtttttagttccttcgtacaacttcaaattgatttatataaattcattgctataaacatatacccattccattattttatttactcagtacttcat |
204 |
Q |
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| T |
35201249 |
atttgttttcagttcctatattcaagttcaaatcgatttatataaattcattgctataagcttatacttattttgttattttatttgctgagtccttcat |
35201150 |
T |
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| Q |
205 |
cactttggacatcagttagtctttgaggatgactttgaagacagatgatgttca |
258 |
Q |
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| T |
35201149 |
caacaaggacagcagatggtctttgaggaagactatgaagactgatgatgttca |
35201096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 35221231 - 35221160
Alignment:
| Q |
110 |
tttttagttccttcgtacaacttcaaattgatttatataaattcattgctataaacatatacccattccatt |
181 |
Q |
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|||| ||||||||| | ||| ||||||||||||| | | ||||||||||||||||| |||||| |||||||| |
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| T |
35221231 |
ttttcagttccttcattcaagttcaaattgatttctcttaattcattgctataaacttatacctattccatt |
35221160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 35271468 - 35271423
Alignment:
| Q |
272 |
tcatcttgatatagtctgttatctgctcagatatttgaaaggcaca |
317 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
35271468 |
tcatcttgatacagtctattatctgctcagatatttgaaatgcaca |
35271423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 35200848 - 35200800
Alignment:
| Q |
263 |
ttgtagtcctcatcttgatatagtctgttatctgctcagatatttgaaa |
311 |
Q |
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||||||||||| |||||||||||||| |||| || |||||||||||||| |
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| T |
35200848 |
ttgtagtcctcgtcttgatatagtctattatatgttcagatatttgaaa |
35200800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 35253132 - 35253085
Alignment:
| Q |
269 |
tcctcatcttgatatagtctgttatctgctcagatatttgaaaggcac |
316 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||| |||| |
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| T |
35253132 |
tcctcatctccatatagtctattatctgctcagatatttgaaatgcac |
35253085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 35264048 - 35264006
Alignment:
| Q |
275 |
tcttgatatagtctgttatctgctcagatatttgaaaggcaca |
317 |
Q |
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|||||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
35264048 |
tcttgatacagtctattatctgctcagatatttgaaatgcaca |
35264006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 8640106 - 8640054
Alignment:
| Q |
136 |
attgatttatataaattcattgctataaacatatacccattccattattttat |
188 |
Q |
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|||||||| | |||||||||||||||| || |||||| ||||| ||||||||| |
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| T |
8640106 |
attgatttctttaaattcattgctatatacttatacctattccgttattttat |
8640054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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