View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5799_low_6 (Length: 310)
Name: NF5799_low_6
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_low_6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 5 - 310
Target Start/End: Complemental strand, 30361359 - 30361059
Alignment:
| Q |
5 |
gaggagcagagaaagagaagaaactgtacatggaacttttgcagaaagaattggaagaggaagcaacaagggttccaaaggctaacccatacccctatac |
104 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30361359 |
gaggagctgagaaagaaaagaaactgtacatggaacttttgcaaaaagaattggaagaggaagcaacaagggttccaaaggctaacccatacccctatac |
30361260 |
T |
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| Q |
105 |
caccgactatcccgtggtacaaaagtgttcattttgttggttcataatatacaattttttacgacattattattatattaaacctaccgataatttgcag |
204 |
Q |
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| T |
30361259 |
caccgactatcccgtggtacaaaagtgttcattttggtggttcataatatactattttttacaacattatt-----attaaacctaccgataatttgcag |
30361165 |
T |
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| Q |
205 |
atcccaccaaagccagaacccaaacaatgcacaaaaccagagccttttcaattggagagtctagtgagacatgaggaagaaatgcaaagggaacaagaag |
304 |
Q |
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| T |
30361164 |
atcccaccaaagccagaacccaaacaatgcacaaaaccagagccttttcaattggagagtctagtgagacatgaggaagaaatgcaaagggaacaagaag |
30361065 |
T |
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| Q |
305 |
aaagac |
310 |
Q |
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|||||| |
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| T |
30361064 |
aaagac |
30361059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 63 - 310
Target Start/End: Complemental strand, 19916701 - 19916455
Alignment:
| Q |
63 |
ggaagcaacaagggttccaaaggctaacccatacccctataccaccgactatcccgtggtacaaaagtgttcattttgttggttcataatatac---aat |
159 |
Q |
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| T |
19916701 |
ggaagcaacaagggttccaaaagctaacctatacccctataccaccgactatcccgtggtactaaagtgttcattttggtggttcataatctgcttcaat |
19916602 |
T |
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| Q |
160 |
tttttacgacattattattatattaaacctaccgataatttgcagatcccaccaaa-gccagaacccaaacaatgcacaaaaccagagccttttcaattg |
258 |
Q |
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| T |
19916601 |
tttttatgacattattattaaat-----ctactgataatttgcagatcccaccaaaagccagaacccaaacaccgcacaaaaccagagccatttcaattg |
19916507 |
T |
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| Q |
259 |
gagagtctagtgagacatgaggaagaaatgcaaagggaacaagaagaaagac |
310 |
Q |
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| T |
19916506 |
gagagtctattaagacataaggaagaaatgcaaagggaacaagaagaaagac |
19916455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 24465621 - 24465902
Alignment:
| Q |
5 |
gaggagcagagaaagagaagaaactgtacatggaacttttgcagaaagaattggaagaggaagcaacaagggttccaaaggctaacccatacccctatac |
104 |
Q |
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||||||| |||||| | |||||| | ||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||| || |
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| T |
24465621 |
gaggagccgagaaaaaaaagaaatttaacatgagacttttgcagaaagaattggaagaggaagcagcacggcttccaaaggctaacccaatcccctgcac |
24465720 |
T |
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| Q |
105 |
caccgactatcccgtggtacaaaagtgttcattttgttggttcataatata---caattttttacgacattattattatattaaacctaccgataatttg |
201 |
Q |
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||| |||||| ||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||||||| || |||| ||||||||| |
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| T |
24465721 |
cacggactatgtcgtggtacaaaagtgtttattttggtggttcataatctagttcaattttttacgacattattattaaat-----ctactgataatttg |
24465815 |
T |
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| Q |
202 |
cagatcccaccaaagccagaacccaaacaatgcacaaaaccagagccttttcaattggagagtctagtgagacatgaggaagaaatg |
288 |
Q |
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| T |
24465816 |
cagatcccaccaaagccagaacccaaacactgcacaaaacctgagggatttcaattgcagagtctaataagacataaggaagaaatg |
24465902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 50 - 303
Target Start/End: Complemental strand, 24466239 - 24465996
Alignment:
| Q |
50 |
aagaattggaagaggaagcaacaagggttccaaaggctaacccatacccctataccaccgactatcccgtggtacaaaagtgttcattttgttggttcat |
149 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
24466239 |
aagaattggaagaggaagcagcacgggttccaaaggctaacccaatcccctgcaccatcgactatctcgtggtacaaaagtgtttattttggtggttcat |
24466140 |
T |
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| Q |
150 |
aatata---caattttttacgacattattattatattaaacctaccgataatttgcagatcccaccaaagccagaacccaaacaatgcacaaaaccagag |
246 |
Q |
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| T |
24466139 |
aatctagttcaattttttacgacattat-----tattaaatctattgataatttgcag--------aaagccagaacccaaacactgcacaaaacctgag |
24466053 |
T |
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| Q |
247 |
ccttttcaattggagagtctagtgagacatgaggaagaaatgcaaagggaacaagaa |
303 |
Q |
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| T |
24466052 |
ggatttcaattgcagagtctagtaagacatgaggaagaaatgcaaagggaacaagaa |
24465996 |
T |
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