View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5799_low_7 (Length: 306)
Name: NF5799_low_7
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5799_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 35148797 - 35148526
Alignment:
| Q |
22 |
ttgattaacttaattaattaaatctaaattaccagttatatacacctttatgaaccaagttatagttaagaataatgattgcacagaaggtgcaagcgtg |
121 |
Q |
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| T |
35148797 |
ttgattaacttaattaattaaatctaaattaccagttatatacacctttatgaaccaagttatagttaagaataatgattgcacagaaggtgcaagcgtg |
35148698 |
T |
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| Q |
122 |
gtgttctaggccacgacatatatcaaaataaatccagatgctattcaggcttcactcaatctattttccatccaaaagttgggcttgaagcaccaagatc |
221 |
Q |
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| T |
35148697 |
gtgttctaggccacgacatatatcaaaataaatccagatgctattcaggcttcac-ccatctattttccatccaaaagttgggcttgaagcaccaagatc |
35148599 |
T |
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| Q |
222 |
cttcatctgtaatgcttcataagcatagtttcttttttggtcctaattgttgcgacaaccaatcctatatatt |
294 |
Q |
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| T |
35148598 |
cttcatctggaatgcttcataagcatagtttcttttttggtcctaattgttgcgacaaccaatcctatatatt |
35148526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 35203032 - 35202992
Alignment:
| Q |
35 |
ttaattaaatctaaattaccagttatatacacctttatgaa |
75 |
Q |
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| T |
35203032 |
ttaattaactcttaattaacagttatatacacctttatgaa |
35202992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 40811921 - 40811883
Alignment:
| Q |
197 |
aagttgggcttgaagcaccaagatccttcatctgtaatg |
235 |
Q |
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| T |
40811921 |
aagttcggcttgaagcaccaagatcattcatctgtaatg |
40811883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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