View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5800-Insertion-3 (Length: 690)
Name: NF5800-Insertion-3
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5800-Insertion-3 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 606; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 8 - 690
Target Start/End: Complemental strand, 8776911 - 8776229
Alignment:
| Q |
8 |
acacatcaagtgagagttttgcaatggtagcggtgatgattgaatatatagcaatgaatcttgattgcatccttaggatcaaactttaagctataccatt |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776911 |
acacatcaagtgagagttttgcaatggtagtggtgatgattgaatatagagcaatgaatcttgattgcatccttaggatcaaactttaagctataccatt |
8776812 |
T |
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| Q |
108 |
tttataaataaaagaagaaaatctaggaagccagaagaatacttgaaaagatatggacctaccagggtacatatcgagatatgatttgctgagaccttta |
207 |
Q |
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| T |
8776811 |
tttataaataaaagaagaaaatctaagaagccagaagaatacttgaaaagatatggacctaccagggtacatatcaagatatgatttgctaagaccttta |
8776712 |
T |
|
| Q |
208 |
gagtaatatgctttgaccaccccctgccgtgtttctagatggcgttcttttttcgtatgcttagatgctttgagaagaagctcatcatactctttttggt |
307 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776711 |
gagtaatatgctttgaccaccccccgccgggtttctagatggcgttctttttttgtatgcttagatgctttgagaagaagctcatcatactctttttggt |
8776612 |
T |
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| Q |
308 |
cataaggcctgtcaagacattccataagtcttctccggaattcagaaagatcataagcagctatctgcttgttgtcttcggggttcattttatccccaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
8776611 |
cataaggcctgtcaagacattccataagtcttttccggaattcagaaagatcataagcagctatttggttgttgtcttcggggttcattttatctccaaa |
8776512 |
T |
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| Q |
408 |
acactaaaaacacatagcataaagacgtgttatgggagaaaataaaaattaattttttggatttgtttctttnnnnnnncggaacagcgtgcatgtttgt |
507 |
Q |
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| T |
8776511 |
acactaaaaacacatagcataaagacgtgttatgggagaaaataaaaattaattttttggatttgtttctttaaaaaaacggaacagcgtgcatgtttgt |
8776412 |
T |
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| Q |
508 |
ggaccgtttgcaaaatatcattaatatagagatacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaaaggggtgttttc |
607 |
Q |
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| T |
8776411 |
ggaccgtttgcaaaatatcattaatatagagacacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaaaggggtgttttc |
8776312 |
T |
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| Q |
608 |
acaaattgggtaagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtat |
690 |
Q |
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| T |
8776311 |
acaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtat |
8776229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 8782617 - 8782472
Alignment:
| Q |
294 |
atactctttttggtcataaggcctgtcaagacattccataagtcttctccggaattcagaaagatcataagcagctatctgcttgttgtcttcggggttc |
393 |
Q |
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| T |
8782617 |
atactctttctggtcataaggcctgtcaagatgttccaaaagtcttctcctaaattgagaatcatcataagcagctatttgcatgttgtctttggggttc |
8782518 |
T |
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| Q |
394 |
attttatccccaaaacactaaaaacacatagcataaagacgtgttatg |
441 |
Q |
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| T |
8782517 |
acttcttctccaaaacactaaacacacaaagcat--agacgtgttatg |
8782472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 690
Target Start/End: Complemental strand, 8788169 - 8787977
Alignment:
| Q |
496 |
gtgcatgtttgtggaccgtttgcaaaatatcattaatatagagatacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaa |
595 |
Q |
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| T |
8788169 |
gtgcatgtttgtagaccattagcaaaatatgactaatacagg--tacactgcaaagttgaagacacttacagatgaatcatatctttttgaaggaacgaa |
8788072 |
T |
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| Q |
596 |
aggggtgttttcacaaattgggtaagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtat |
690 |
Q |
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| T |
8788071 |
aggggtatcttcacaaacttgataaggttccaaaatagtaacatctggatcggagcaattacccccatcctccaccgtgggtgtgtttgtggtat |
8787977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 689
Target Start/End: Complemental strand, 8782411 - 8782220
Alignment:
| Q |
496 |
gtgcatgtttgtggaccgtttgcaaaatatcattaatatagagatacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaa |
595 |
Q |
| |
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|||||||||||| |||| |||| ||||||| | ||||| ||| | || ||| |||||||||| | |||| |||| ||||||| | ||||||| |||||| |
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| T |
8782411 |
gtgcatgtttgtagaccatttgaaaaatattactaatacagaaa--cagtgtaaagttgaagaaacttacagatgaatcatatatatttgaaggaacgaa |
8782314 |
T |
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| Q |
596 |
aggggtgttttcacaaattgggtaagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggta |
689 |
Q |
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| T |
8782313 |
agggttagcttcacaaattggataagatttcaaaatagttacatctggatcggagggaatacccccatcctccaccttggatgtgtttgtggta |
8782220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 8788378 - 8788299
Alignment:
| Q |
292 |
tcatactctttttggtcataaggcctgtcaagacattccataagtcttctccggaattcagaaagatcataagcagctat |
371 |
Q |
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|||||||||| ||||| ||||||||| |||||| ||||| ||||||||||| |||| |||| ||||||||||||||| |
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| T |
8788378 |
tcatactcttgttggttataaggcctttcaagatgttccaaaagtcttctcctaaattgagaatcatcataagcagctat |
8788299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 139 - 687
Target Start/End: Original strand, 2540893 - 2541444
Alignment:
| Q |
139 |
cagaagaatacttgaaaagatatggacctaccagggtacatatcgagatatgatttgctgagacctttagagtaatatgctttgaccaccccctgccgtg |
238 |
Q |
| |
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||||||||||||||| || ||||||||||||| |||| | |||| |||||||||||||||||||||| | ||| ||||| ||| |||||||||||||||| |
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| T |
2540893 |
cagaagaatacttgagaaaatatggacctaccggggtgcgtatcaagatatgatttgctgagaccttcacagtgatatgatttaaccaccccctgccgtg |
2540992 |
T |
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| Q |
239 |
tttctagatggcgttcttttttcgtatgcttagatgctttgagaagaagctcatcatactctttttggtcataaggcctgtcaagacattccataagtct |
338 |
Q |
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| T |
2540993 |
tttctagatgacgttcttttttcgcttgtttagatactttgagcagaaggtcatcatactcttcttcgtcataaggcctttcaagacattccataagtgt |
2541092 |
T |
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| Q |
339 |
tctccggaattcagaaagatcataagcagctatctgcttgttgtcttcggggttcattttatccccaaaacactaaaaacacatagcataaagacgtgtt |
438 |
Q |
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| T |
2541093 |
tctcctaaattgagaatgatcataagcagctatttgcttgttgtcttcggggttcgtttcttctccaaaacactaaaaacagatagcataaagacgtgtt |
2541192 |
T |
|
| Q |
439 |
atgggagaaaataaaaattaattttttggatttgtttc-tttnnnnnnncggaacagcgtgcatgtttgtggaccgtttgcaaaatatcattaatataga |
537 |
Q |
| |
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|||| |||| |||||||||| | |||||| || |||| ||| | ||| ||| ||||||||| ||| | |||||||||||| | ||||| ||| |
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| T |
2541193 |
atggaagaagttaaaaattaactgtttggaattttttcttttaaaaaaactgaatagcatgcatgtttaaggatcatttgcaaaatatgactaatacaga |
2541292 |
T |
|
| Q |
538 |
gatacactgtg--aagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaaaggggtgttttcacaaattgggtaagaatccaaaataatc |
635 |
Q |
| |
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|||| |||||| |||||||||| | |||| |||| ||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
2541293 |
gatatactgtgcaaagttgaagacacttactgatgaatcatatgtctttgaagaaacgaaaggggtgtttccacagattggaaaagaatccaaaataatt |
2541392 |
T |
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| Q |
636 |
agatctgaatcagaggaattattctcatcctccacattggatgtgttggtgg |
687 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||| |||| |
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| T |
2541393 |
agatctgaatcagaggaattactatcatcctccacattggatgtgttagtgg |
2541444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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