View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5800-Insertion-4 (Length: 652)
Name: NF5800-Insertion-4
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5800-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 7 - 608
Target Start/End: Complemental strand, 54806070 - 54805469
Alignment:
| Q |
7 |
catgtttggtactacgggggccaccatgattttggtaaactaaccgtgacacctaacacgcactaaggattaatagtgtcaattgtcaagcatggttgtg |
106 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |
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| T |
54806070 |
catgtttggtactacgtgggccaccataattttggtaaactaaccgtgacacctaacacacactaaggaccaatagtgtcaattgtcaagcatggctgtg |
54805971 |
T |
|
| Q |
107 |
agacttgcgaattaactcgtacattcagacgagtttacgagtctaggagaccaaaacgagttgactcgctctcagacttgttttagtggtagactcgctt |
206 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54805970 |
agacttgcgaattaactcgtacattcagacgaatttacgagtctaagagaccaaaacgagttgactcgctctcagacttgttttagtggtagactcgctt |
54805871 |
T |
|
| Q |
207 |
ggactcggatagactgttacgagtcgagtctacggaccctttgtgattctatgtagactcgcgattctgacgatgctgtcaagaattcagaatgctttta |
306 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54805870 |
ggactcggatagactgttacgagtcaagtctacggaccctttgtgattctatgtagactcatgattctgacgatgctgtcaagaattcagaatgctttta |
54805771 |
T |
|
| Q |
307 |
aattctgacatcaatcttgtgaactaatacacatgaaggaatgcttctctgaagttaagcctcgttttaaaggataaagtgagatatctaagtaaaaacc |
406 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54805770 |
aattttgacatcaatcttgtgaactaatacacatgaaggaatgctcctctgaagttaagcctcgttttaaaggataaagtgagatatctaagtaaaaacc |
54805671 |
T |
|
| Q |
407 |
attgctgataaaataaactgttaatatattttgtcatttatgattaaaataaaatttgtatgctgttttattaacctccgggtatattataaaatgtcat |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54805670 |
attgctgataaaataaactgttaatatattttgtcatttatgattaaaataaaatttatatgctgttttattaacctccaggtatattataaaatgtcat |
54805571 |
T |
|
| Q |
507 |
ttcttattctttactacattgtggcattgaacttgacaaacggacaagaggtgtttttaaattgatctgttaaatgttttaaatttatcagaatgcttcc |
606 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54805570 |
ttattattctttactacattgtggcattgaacttgacaaacggacaagaggtgtttttaaattgatctgttaaatgttttaaatttatcagaatgcttcc |
54805471 |
T |
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| Q |
607 |
aa |
608 |
Q |
| |
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|| |
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| T |
54805470 |
aa |
54805469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 652
Target Start/End: Complemental strand, 54805449 - 54805412
Alignment:
| Q |
615 |
tcagttcataacttaatctgaattttgattccaattgg |
652 |
Q |
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| T |
54805449 |
tcagttcataacttaatctgaattttgattccaattgg |
54805412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 45269384 - 45269283
Alignment:
| Q |
96 |
gcatggttgtgagacttgcgaattaactcgtacattcagacgagtttacgagtctaggagaccaaaacgagttgactcgctctcagacttgttttagtgg |
195 |
Q |
| |
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|||||||||| |||||||| ||| |||| ||| | || ||| | |||| |||||||| || ||||||| |||||||||| |||||||| ||||| |||| |
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| T |
45269384 |
gcatggttgttagacttgcaaatcaacttgtagagtcggacaattttaagagtctagaaggccaaaacaagttgactcg--ctcagactcgttttcgtgg |
45269287 |
T |
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| Q |
196 |
taga |
199 |
Q |
| |
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|||| |
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|
| T |
45269286 |
taga |
45269283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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