View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5800-Insertion-6 (Length: 563)
Name: NF5800-Insertion-6
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5800-Insertion-6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 9 - 563
Target Start/End: Original strand, 43141754 - 43142308
Alignment:
| Q |
9 |
ttaactccccattttatagttgatgtatcagcttggcttgctttgcttcccatctgtcacgtgcacagatttgacatccataattcttgcattgagatat |
108 |
Q |
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| T |
43141754 |
ttaactccccattttatagttgatgtatcagcttggcttgctttgcttcccatctgtcacgtgcacagatttgacatccataattcttgcattgagatat |
43141853 |
T |
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| Q |
109 |
catgatatacttgcaacacaagaaacattgtaggaatagggaaatctacattgtgtttccttaaatattgctttgtattccttggcttttgttgttttta |
208 |
Q |
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| T |
43141854 |
catgatatacttgcaacacaagaaacattgtaggaatagggaaatctacattgtgtttccttaaatattgctttgtattccttggcttttgttgttttta |
43141953 |
T |
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| Q |
209 |
gagaaatatccatgatacataatcataaatctgaatattttgtttgctctgcagggatattttatttgcttaacacttgctcttgggtatgcttttgctt |
308 |
Q |
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| T |
43141954 |
gagaaatatc-atgatacataatcataaatctgaatattttgtttgctctgcagggatattttatttgcttaacacttgctcttgggtatgctcttgctt |
43142052 |
T |
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| Q |
309 |
ct-attttaggtactcattacttaataatgaatgtcatagaatctggaaacgcttccgttgtcatgcgcctatgagaaagactgcatcttcccccttaca |
407 |
Q |
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| T |
43142053 |
cttattttaggtactcattacttaataatgaatgtcatagaatctggaaacgcttccgttgtcatgcgcctatgagaaagactgcatcttcccccttaca |
43142152 |
T |
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| Q |
408 |
ggaacagagcgatcaaacaaatgaaggatgctatgaagaatggcaatagcctttctttcctttgtcatgacataaatgagcttgagcactcctatcaggc |
507 |
Q |
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| T |
43142153 |
ggaacagagcgatcaaacaaatgaaagatgctatgaagaatggcaatagcctttctttcctttgtcatgacataaatgagcttgagcactcctatcaggc |
43142252 |
T |
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| Q |
508 |
caatcttccaagagtaacagtagtcatataggacacattcccctgaaaaggtttgg |
563 |
Q |
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| T |
43142253 |
caatcttccaagagtaacagtagtcatataggacacattcccctgaaaaggtttgg |
43142308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 208 - 534
Target Start/End: Original strand, 43153551 - 43153875
Alignment:
| Q |
208 |
agagaaatatccatgatacataatcataaatctgaatattttgtttgctctgcagggatattttatttgcttaacacttgctcttgggtatgcttttgct |
307 |
Q |
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| T |
43153551 |
agagaaatatc-atggtaaataataataaatctgaatgttatgtttactttgcagggatgtttcatttgcttaacacttgctcttgggtgggctcttgct |
43153649 |
T |
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| Q |
308 |
tct-attttaggtactcattacttaataatgaat-gtcatagaatctggaaacgcttccgttgtcatgcgcctatgagaaagactgcatcttccccctta |
405 |
Q |
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| T |
43153650 |
tcttatgttaggtactcattagtcattactcaatagtgtcagaatccagaaacactttcattgtca--cccctatgagaaatactgaatttttccc-tta |
43153746 |
T |
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| Q |
406 |
caggaacagagcgatcaaacaaatgaaggatgctatgaagaatggcaatagcctttctttcctttgtcatgacataaatgagcttgagcactcctatcag |
505 |
Q |
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| T |
43153747 |
caggaacagagagataaaacaaatgaaggaagctatgcagaatggcaatagtctttctttcctatgtcatgacataaatgagcttgagcacttctatcag |
43153846 |
T |
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| Q |
506 |
gccaatcttccaagagtaacagtagtcat |
534 |
Q |
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| T |
43153847 |
gccaatcttccaagagtaacagtagtcat |
43153875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 43153207 - 43153267
Alignment:
| Q |
33 |
gtatcagcttggc-ttgctttgcttcccatctgtcacgtgcacagatttgacatccataat |
92 |
Q |
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| T |
43153207 |
gtatcagcttggggttgctttgcttcccatctgtcatgttcacagatttgacatccataat |
43153267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 43153311 - 43153348
Alignment:
| Q |
113 |
atatacttgcaacacaagaaacattgtaggaataggga |
150 |
Q |
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| T |
43153311 |
atatacttgcaacacaagaaacactgtagggataggga |
43153348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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