View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5800-Insertion-7 (Length: 371)

Name: NF5800-Insertion-7
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5800-Insertion-7
NF5800-Insertion-7
[»] chr6 (1 HSPs)
chr6 (11-371)||(32213117-32213470)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 32213117 - 32213470
Alignment:
Q  11 taatatcttataataagaagaaggagagagacatgaaggaagtgtggaaacaaagaagcttaaggtcaagttttattggggaagcaaaaatatgcacaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32213117 taatatcttataataagaagaaggagagagacatgaaggaagtgtggaaacaaagaaacttaaggtcaagttttattggggaagcaaaaatatgcacaaa 32213216  T
Q  111 gctcaatgaagtttagaaagaatattattaagaatagaatatgtgattaagagtttgtcatgtgatgtgtaccacccaccaaacacaagacaaaacttaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  32213217 gctcaatgaagtttagaaagaatattattaagaatagaatatgtgattaagagtttgtcatgtgatgt------accaccaaacacaagacaaaacttaa 32213310  T
Q  211 ttaattaacttaatgaaggaattggatcatctacaaatgtagaccgttagatttnnnnnnntaaattttctctaaattcaactgtttctatgattccagc 310  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||| ||||       | ||||||||||||||||||||||||||| |||| || |    
T  32213311 ttaattaacttaatgaaggaattgaatcatctataaatgtagacagttaaatttaaaaagat-aattttctctaaattcaactgtttctacgattgcaac 32213409  T
Q  311 actatacataatacaatcgtagagaatccaagctgcaataccgtagtccgatcgtagaaga 371  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||    
T  32213410 actatacatactgcaatcgtagagaatccaagctgcaataccgtagttcaatcgtagaaga 32213470  T

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