View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5800_high_6 (Length: 266)

Name: NF5800_high_6
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5800_high_6
NF5800_high_6
[»] chr3 (18 HSPs)
chr3 (50-253)||(41935394-41935600)
chr3 (1-65)||(41935314-41935378)
chr3 (190-250)||(22456150-22456211)
chr3 (217-253)||(23209419-23209455)
chr3 (202-247)||(6784261-6784306)
chr3 (190-250)||(22479196-22479257)
chr3 (190-250)||(38401295-38401356)
chr3 (217-250)||(49583908-49583941)
chr3 (190-249)||(32070162-32070221)
chr3 (190-253)||(27876053-27876118)
chr3 (191-250)||(30454866-30454927)
chr3 (217-250)||(7886759-7886792)
chr3 (217-250)||(10251954-10251987)
chr3 (190-250)||(21214156-21214217)
chr3 (217-250)||(34194831-34194864)
chr3 (217-250)||(48291765-48291798)
chr3 (191-250)||(2994560-2994620)
chr3 (190-250)||(10114827-10114887)
[»] chr2 (9 HSPs)
chr2 (192-245)||(16495036-16495089)
chr2 (191-250)||(9709432-9709492)
chr2 (217-250)||(32273616-32273649)
chr2 (190-250)||(38070913-38070974)
chr2 (205-250)||(11031105-11031151)
chr2 (217-247)||(26998262-26998292)
chr2 (190-247)||(32010019-32010077)
chr2 (217-250)||(20380068-20380101)
chr2 (190-250)||(44442050-44442108)
[»] chr4 (11 HSPs)
chr4 (190-250)||(23978291-23978352)
chr4 (190-253)||(40553685-40553748)
chr4 (190-247)||(8013268-8013326)
chr4 (190-247)||(8178418-8178475)
chr4 (191-250)||(46070696-46070757)
chr4 (190-250)||(37911799-37911860)
chr4 (217-252)||(4512974-4513009)
chr4 (197-247)||(53848389-53848440)
chr4 (197-250)||(21181111-21181165)
chr4 (217-250)||(49080198-49080231)
chr4 (191-250)||(47516367-47516427)
[»] chr7 (4 HSPs)
chr7 (202-250)||(31769144-31769192)
chr7 (202-250)||(35888151-35888199)
chr7 (192-247)||(24151764-24151820)
chr7 (190-242)||(25651450-25651503)
[»] chr6 (9 HSPs)
chr6 (190-250)||(5300776-5300836)
chr6 (190-247)||(13854875-13854932)
chr6 (217-250)||(3888370-3888403)
chr6 (190-250)||(4031902-4031963)
chr6 (192-250)||(4987860-4987919)
chr6 (197-250)||(2851482-2851536)
chr6 (190-246)||(1130434-1130491)
chr6 (202-250)||(5822204-5822253)
chr6 (202-250)||(5881935-5881984)
[»] chr1 (9 HSPs)
chr1 (190-250)||(5858554-5858616)
chr1 (190-250)||(16661432-16661493)
chr1 (192-250)||(37538728-37538787)
chr1 (205-253)||(34102151-34102200)
chr1 (201-250)||(13351608-13351658)
chr1 (202-247)||(41063670-41063716)
chr1 (204-253)||(15912131-15912179)
chr1 (217-250)||(35366386-35366419)
chr1 (206-250)||(30701568-30701611)
[»] chr8 (11 HSPs)
chr8 (190-247)||(17713138-17713196)
chr8 (190-250)||(14576326-14576387)
chr8 (206-253)||(8712452-8712499)
chr8 (217-250)||(5217335-5217368)
chr8 (202-253)||(12893954-12894006)
chr8 (202-253)||(28497694-28497746)
chr8 (192-246)||(38072114-38072169)
chr8 (202-247)||(2628351-2628397)
chr8 (217-250)||(17314773-17314806)
chr8 (191-250)||(26954576-26954636)
chr8 (206-250)||(27740539-27740583)
[»] chr5 (15 HSPs)
chr5 (190-250)||(28906985-28907046)
chr5 (190-250)||(28943380-28943441)
chr5 (192-250)||(8959559-8959618)
chr5 (190-250)||(8506354-8506415)
chr5 (190-250)||(35275408-35275468)
chr5 (191-247)||(5659709-5659767)
chr5 (217-250)||(1144679-1144712)
chr5 (217-250)||(3463999-3464032)
chr5 (217-250)||(10154111-10154144)
chr5 (190-247)||(12912480-12912537)
chr5 (217-250)||(16153528-16153561)
chr5 (217-250)||(29307372-29307405)
chr5 (205-249)||(3103510-3103554)
chr5 (217-253)||(6391814-6391850)
chr5 (202-253)||(30893531-30893583)
[»] scaffold0565 (1 HSPs)
scaffold0565 (192-250)||(6056-6114)
[»] scaffold0330 (1 HSPs)
scaffold0330 (191-250)||(3086-3146)
[»] scaffold1157 (1 HSPs)
scaffold1157 (202-247)||(2045-2090)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 41935394 - 41935600
Alignment:
Q  50 atactatcaattactc--agaaaaatgctttttgatagtactacaggaaaacttataaaagnnnnnnngcaactgaataattaacgatataaataaattc 147  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||       |||||| |||||||||| ||||||||||||||    
T  41935394 atactatcaattactctaagaaaaatgctttttgatagtactacagaaaaacttataaaagaaaaaaagcaactaaataattaacaatataaataaattc 41935493  T
Q  148 caagggaaatactccatccgtcataaattataagg-nnnnnnntcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaatta 246  Q
    |||||||||||||||||||||| ||||||||||||         |||||  ||| |||||||||||||  |||||| |||||||||||||||||||||||    
T  41935494 caagggaaatactccatccgtcctaaattataaggaaaaaaagacattttttttgtcccaaattataagcaaaaaggccaacttttatcatatttaatta 41935593  T
Q  247 tgttatt 253  Q
    |||||||    
T  41935594 tgttatt 41935600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41935314 - 41935378
Alignment:
Q  1 aaaacatgtaatcatccgtatcaaaagcattatcgaggtttctttggagatactatcaattactc 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41935314 aaaacatgtaatcatccgtatcaaaagcattatcgaggtttcttttgagatactatcaattactc 41935378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 22456211 - 22456150
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  22456211 tcattttctttatcccaaattataagcaaaaaagaccaacttttatcatatttaattatgtt 22456150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 23209455 - 23209419
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgttatt 253  Q
    |||||||||||||||||||||||||||||||||||||    
T  23209455 aaaaagaccaacttttatcatatttaattatgttatt 23209419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 6784261 - 6784306
Alignment:
Q  202 tcccaaattataaataaaaagaccaacttttatcatatttaattat 247  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||    
T  6784261 tcccaaattataagaaaaaagactaacttttatcatatttaattat 6784306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 22479257 - 22479196
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| |||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  22479257 tcattttctttgtcccaaattataagcaaaaaagacaaacttttatcatatttaattatgtt 22479196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 38401295 - 38401356
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| |||||||||||||  ||||| || ||||||||||||||||||||||||||    
T  38401295 tcattttctttgtcccaaattataagcaaaaaagatcaacttttatcatatttaattatgtt 38401356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 49583908 - 49583941
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||||||||||||||||||||||||||||||    
T  49583908 aaaaagaccaacttttatcatatttaattatgtt 49583941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 32070162 - 32070221
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattatgt 249  Q
    |||||| |||| |||||||||||||  |||||||  |||||||||||||||||| |||||    
T  32070162 tcattttctttctcccaaattataagcaaaaagataaacttttatcatatttaactatgt 32070221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 27876118 - 27876053
Alignment:
Q  190 tcatttcctttatcccaaattataaataa--aaagaccaacttttatcatatttaattatgttatt 253  Q
    |||||| |||||||| ||||||||||  |  |||||| |||||||||||||||||||||| |||||    
T  27876118 tcattttctttatcctaaattataaagcagaaaagactaacttttatcatatttaattatattatt 27876053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 30454927 - 30454866
Alignment:
Q  191 catttcctttatcccaaattataa--ataaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||| |||| |||||||||||||  | ||||| ||||||||||| ||||||||||||||||    
T  30454927 cattttctttgtcccaaattataagcaaaaaaaaaccaacttttagcatatttaattatgtt 30454866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 7886792 - 7886759
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||| ||||||||||||||||||||||||||||    
T  7886792 aaaaataccaacttttatcatatttaattatgtt 7886759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 10251954 - 10251987
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||| ||||||||||||||||||||||||||||    
T  10251954 aaaaataccaacttttatcatatttaattatgtt 10251987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 21214156 - 21214217
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| |||||||||||||  ||||| || |||||||||||| |||||||||||||    
T  21214156 tcattttctttgtcccaaattataagcaaaaaagatcaacttttatcacatttaattatgtt 21214217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 34194831 - 34194864
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||||||||||||||||| ||||||||||||    
T  34194831 aaaaagaccaacttttatcatttttaattatgtt 34194864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 48291765 - 48291798
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||| ||||||||||||||||||||||||||    
T  48291765 aaaaagatcaacttttatcatatttaattatgtt 48291798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 2994620 - 2994560
Alignment:
Q  191 catttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    ||||| |||| |||||||||||||  ||||| ||| |||||||||| ||||||||||||||    
T  2994620 cattttctttgtcccaaattataagaaaaaatgacaaacttttatcgtatttaattatgtt 2994560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 10114827 - 10114887
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| || ||||||||||  |||||   ||||||||||||||||||||||||||    
T  10114827 tcattttctttgtctcaaattataagcaaaaaatacaacttttatcatatttaattatgtt 10114887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 16495089 - 16495036
Alignment:
Q  192 atttcctttatcccaaattataaataaaaagaccaacttttatcatatttaatt 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16495089 attttctttatcccaaattataaataaaaagaccaacttttatcgtatttaatt 16495036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 9709432 - 9709492
Alignment:
Q  191 catttcctttatcccaaattataa-ataaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||| |||| ||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  9709432 cattttctttgtcccaaattataataaaaaaagactaacttttatcatatttaattatgtt 9709492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 32273616 - 32273649
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||||||||||||||||||||||||||||||    
T  32273616 aaaaagaccaacttttatcatatttaattatgtt 32273649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 38070913 - 38070974
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| |||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  38070913 tcattttctttgtcccaaattataagcaaaaaagacaaacttttatcatatttaattatgtt 38070974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 11031151 - 11031105
Alignment:
Q  205 caaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||||||| |||||| || ||||||||||||||||||||||||||    
T  11031151 caaattataagtaaaaaagatcaacttttatcatatttaattatgtt 11031105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 26998262 - 26998292
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattat 247  Q
    |||||||||||||||||||||||||||||||    
T  26998262 aaaaagaccaacttttatcatatttaattat 26998292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 32010019 - 32010077
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattat 247  Q
    |||||| |||| | ||||||||||| |||||| || |||||||||||||||||||||||    
T  32010019 tcattttctttgttccaaattataagtaaaaaagatcaacttttatcatatttaattat 32010077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 20380068 - 20380101
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||||||||||||||| ||||||||||||||    
T  20380068 aaaaagaccaacttttatcttatttaattatgtt 20380101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 44442050 - 44442108
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| |||||||||||||  ||||||| ||||||||||  ||||||||||||||    
T  44442050 tcattttctttgtcccaaattataaggaaaaagagcaacttttat--tatttaattatgtt 44442108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 23978352 - 23978291
Alignment:
Q  190 tcatttcctttatcccaaattataaat-aaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23978352 tcattttctttatcccaaattataagcgaaaaagaccaacttttatcatatttaattatgtt 23978291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 40553685 - 40553748
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattatgttatt 253  Q
    |||||| |||| ||||||||||||   |||||||||||| ||||||||||||||||||||||||    
T  40553685 tcattttctttgtcccaaattatatgcaaaaagaccaacatttatcatatttaattatgttatt 40553748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 8013326 - 8013268
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattat 247  Q
    |||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  8013326 tcattttctttgtcccaaattataagtaaaaaagaccaacttttatcatatttaattat 8013268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 8178475 - 8178418
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattat 247  Q
    |||||| |||| || ||||||||||  |||||||||||||||||||||||||||||||    
T  8178475 tcattttctttgtctcaaattataagaaaaaagaccaacttttatcatatttaattat 8178418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 46070757 - 46070696
Alignment:
Q  191 catttcctttatcccaaattataa--ataaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||| |||| |||||||||||||  | ||||||||||| ||||||||||||||||||||||    
T  46070757 cattttctttgtcccaaattataagcaaaaaaagaccaatttttatcatatttaattatgtt 46070696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 37911799 - 37911860
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| ||||||||||||| |||||| ||| || ||||||||||||||||||||||    
T  37911799 tcattttctttgtcccaaattataagtaaaaaagactaaattttatcatatttaattatgtt 37911860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 4512974 - 4513009
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgttat 252  Q
    |||||||||||||||||||||||||||||| |||||    
T  4512974 aaaaagaccaacttttatcatatttaattaggttat 4513009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 53848389 - 53848440
Alignment:
Q  197 ctttatcccaaattataaataaaa-agaccaacttttatcatatttaattat 247  Q
    |||| ||||||||||||| ||||| |||||||||||||||| ||||||||||    
T  53848389 ctttgtcccaaattataagtaaaaaagaccaacttttatcaaatttaattat 53848440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 21181165 - 21181111
Alignment:
Q  197 ctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||| |||||||||||||||||||| ||| || ||||||| ||||||||||||||    
T  21181165 ctttgtcccaaattataaataaaaaagacaaatttttatcctatttaattatgtt 21181111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 49080198 - 49080231
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||| ||||||||||||||||||||||||||    
T  49080198 aaaaagatcaacttttatcatatttaattatgtt 49080231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 47516427 - 47516367
Alignment:
Q  191 catttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    ||||| |||| |||||||||||||  ||||| ||||||||||||| | |||||||||||||    
T  47516427 cattttctttgtcccaaattataagcaaaaaagaccaacttttattacatttaattatgtt 47516367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 31769192 - 31769144
Alignment:
Q  202 tcccaaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  31769192 tcccaaattataagcaaaaagaccaacttttatcatatttaattatgtt 31769144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 35888199 - 35888151
Alignment:
Q  202 tcccaaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  35888199 tcccaaattataagaaaaaagaccaactttcatcatatttaattatgtt 35888151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 24151820 - 24151764
Alignment:
Q  192 atttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattat 247  Q
    |||| |||| |||||||||||||  ||||| ||||||||||||||||||||||||||    
T  24151820 attttctttgtcccaaattataagcaaaaaagaccaacttttatcatatttaattat 24151764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 25651503 - 25651450
Alignment:
Q  190 tcatttcctttatcccaaattataaat-aaaaagaccaacttttatcatattta 242  Q
    |||||| |||||||||||||| ||| | |||||||| |||||||||||||||||    
T  25651503 tcattttctttatcccaaattttaagttaaaaagactaacttttatcatattta 25651450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 5300836 - 5300776
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| |||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  5300836 tcattttctttgtcccaaattataagcaaaaagatcaacttttatcatatttaattatgtt 5300776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 13854932 - 13854875
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattat 247  Q
    |||||| |||||||  |||||||||  |||||||||||||||||||||||||||||||    
T  13854932 tcattttctttatcttaaattataagcaaaaagaccaacttttatcatatttaattat 13854875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 3888370 - 3888403
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||||||||||||||||||||||||||||||    
T  3888370 aaaaagaccaacttttatcatatttaattatgtt 3888403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 4031902 - 4031963
Alignment:
Q  190 tcatttcctttatcccaaattataaata-aaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||| ||||||| ||||||||||  | |||||||||||||| ||||||||||||||||||    
T  4031902 tcattttctttatctcaaattataagcataaaagaccaactttaatcatatttaattatgtt 4031963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 4987860 - 4987919
Alignment:
Q  192 atttcctttatcccaaattataaat-aaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||| |||| ||||||||||||||| |||||||| ||||||||||||||| || ||||||    
T  4987860 attttctttgtcccaaattataaataaaaaagactaacttttatcatattcaaatatgtt 4987919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 2851482 - 2851536
Alignment:
Q  197 ctttatcccaaattataaat-aaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||| ||||||||||||||| |||||||| || ||||||| ||||||||||||||    
T  2851482 ctttgtcccaaattataaatgaaaaagacaaatttttatcctatttaattatgtt 2851536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 1130434 - 1130491
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaaga-ccaacttttatcatatttaatta 246  Q
    |||||| |||| |||||||||||||  ||||| | |||||||||||||||||||||||    
T  1130434 tcattttctttgtcccaaattataagcaaaaaaaaccaacttttatcatatttaatta 1130491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 5822253 - 5822204
Alignment:
Q  202 tcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||||||||||| ||||| ||| || ||||||||||||||||||||||    
T  5822253 tcccaaattataaacaaaaaagactaatttttatcatatttaattatgtt 5822204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 5881984 - 5881935
Alignment:
Q  202 tcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||||||||||| ||||| ||| || ||||||||||||||||||||||    
T  5881984 tcccaaattataaacaaaaatgactaatttttatcatatttaattatgtt 5881935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 5858616 - 5858554
Alignment:
Q  190 tcatttcctttatcccaaattataa--ataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||| ||||||||||||||||||  | |||||||| |||||||||||||||||||||||||    
T  5858616 tcattttctttatcccaaattataagcaaaaaaagacaaacttttatcatatttaattatgtt 5858554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 16661432 - 16661493
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaa-agaccaacttttatcatatttaattatgtt 250  Q
    |||||| ||||||||||||||||||  |||| ||||||||| ||||||||||||||||||||    
T  16661432 tcattttctttatcccaaattataagcaaaaaagaccaactgttatcatatttaattatgtt 16661493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 37538728 - 37538787
Alignment:
Q  192 atttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||| |||| |||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  37538728 attttctttgtcccaaattataaacaaaaaagatcaacttttatcatatttaattatgtt 37538787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 34102200 - 34102151
Alignment:
Q  205 caaattataaataaaaa-gaccaacttttatcatatttaattatgttatt 253  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  34102200 caaattataaacaaaaaagacaaacttttatcatatttaattatgttatt 34102151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 13351608 - 13351658
Alignment:
Q  201 atcccaaattataaataaaa-agaccaacttttatcatatttaattatgtt 250  Q
    ||||||||||||||  |||| |||||||||||||| |||||||||||||||    
T  13351608 atcccaaattataagcaaaaaagaccaacttttattatatttaattatgtt 13351658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 41063670 - 41063716
Alignment:
Q  202 tcccaaattataa-ataaaaagaccaacttttatcatatttaattat 247  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||    
T  41063670 tcccaaattataagaaaaaaagaccaacttttatcatttttaattat 41063716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 15912131 - 15912179
Alignment:
Q  204 ccaaattataaataaaaagaccaacttttatcatatttaattatgttatt 253  Q
    |||||||||||  ||||| || ||||||||||||||||||||||||||||    
T  15912131 ccaaattataaggaaaaaaac-aacttttatcatatttaattatgttatt 15912179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 35366419 - 35366386
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||| ||||||||||||||||||||||||||    
T  35366419 aaaaagatcaacttttatcatatttaattatgtt 35366386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 30701611 - 30701568
Alignment:
Q  206 aaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||    
T  30701611 aaattataagaaaaaagaccaa-ttttatcatatttaattatgtt 30701568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 17713138 - 17713196
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaa-agaccaacttttatcatatttaattat 247  Q
    |||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  17713138 tcattttctttgtcccaaattataagtaaaaaagaccaacttttatcatatttaattat 17713196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 14576387 - 14576326
Alignment:
Q  190 tcatttcctttatcccaaattataa-ataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||    
T  14576387 tcattttctttatcctaaattataataaaaaaagatcaacttttatcatatttaattatgtt 14576326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 8712452 - 8712499
Alignment:
Q  206 aaattataaataaaaagaccaacttttatcatatttaattatgttatt 253  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||    
T  8712452 aaattataagtaaaaagaccaacttttattttatttaattatgttatt 8712499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 5217335 - 5217368
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||||||||||||||||||||||||||||||    
T  5217335 aaaaagaccaacttttatcatatttaattatgtt 5217368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 12894006 - 12893954
Alignment:
Q  202 tcccaaattataaa-taaaaagaccaacttttatcatatttaattatgttatt 253  Q
    |||||||||||||  |||||| || ||||||||||||||||||||||||||||    
T  12894006 tcccaaattataagctaaaaaaactaacttttatcatatttaattatgttatt 12893954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 28497746 - 28497694
Alignment:
Q  202 tcccaaattataaataaaa-agaccaacttttatcatatttaattatgttatt 253  Q
    |||||||||||||  |||| | |||||||||||||||||||||||||||||||    
T  28497746 tcccaaattataagcaaaatataccaacttttatcatatttaattatgttatt 28497694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 38072114 - 38072169
Alignment:
Q  192 atttcctttatcccaaattataaataaaa-agaccaacttttatcatatttaatta 246  Q
    |||| |||| |||||||||||||  |||| ||||||||||||||||||||||||||    
T  38072114 attttctttgtcccaaattataagcaaaaaagaccaacttttatcatatttaatta 38072169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 2628397 - 2628351
Alignment:
Q  202 tcccaaattataa-ataaaaagaccaacttttatcatatttaattat 247  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||    
T  2628397 tcccaaattataagaaaaaaacaccaacttttatcatatttaattat 2628351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 17314773 - 17314806
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||| ||||||||||||||||||||||||||    
T  17314773 aaaaagatcaacttttatcatatttaattatgtt 17314806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 26954636 - 26954576
Alignment:
Q  191 catttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    ||||| |||| ||||||||||||| |||||| |||||| ||||||||||||| | ||||||    
T  26954636 cattttctttgtcccaaattataagtaaaaaagaccaaattttatcatattttactatgtt 26954576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 27740539 - 27740583
Alignment:
Q  206 aaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||||||  |||||||  |||||||||||||||||||||||||    
T  27740539 aaattataagaaaaaagataaacttttatcatatttaattatgtt 27740583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 28906985 - 28907046
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaa-agaccaacttttatcatatttaattatgtt 250  Q
    |||||| ||||||||||||||||||  |||| ||||||||| ||||||||||||||||||||    
T  28906985 tcattttctttatcccaaattataagcaaaaaagaccaactgttatcatatttaattatgtt 28907046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 28943380 - 28943441
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaa-agaccaacttttatcatatttaattatgtt 250  Q
    |||||| ||||||||||||||||||  |||| ||||||||| ||||||||||||||||||||    
T  28943380 tcattttctttatcccaaattataagcaaaaaagaccaactgttatcatatttaattatgtt 28943441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 8959559 - 8959618
Alignment:
Q  192 atttcctttatcccaaattataaataaaa-agaccaacttttatcatatttaattatgtt 250  Q
    |||| |||||||| |||||||||  |||| ||||||||||||||||||||||||||||||    
T  8959559 attttctttatcctaaattataagcaaaaaagaccaacttttatcatatttaattatgtt 8959618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 8506354 - 8506415
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| ||||||||||||| |||||| || |||||||| |||||||||||||||||    
T  8506354 tcattttctttctcccaaattataagtaaaaaagatcaacttttgtcatatttaattatgtt 8506415  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 35275468 - 35275408
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||| |||| ||||||||||||   ||||| ||||| ||||||||||||||||||||||    
T  35275468 tcattttctttgtcccaaattataggaaaaaataccaaattttatcatatttaattatgtt 35275408  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 5659767 - 5659709
Alignment:
Q  191 catttcctttatcccaaattataa--ataaaaagaccaacttttatcatatttaattat 247  Q
    ||||| |||||||| |||||||||  | ||||||| |||||||||||||||||||||||    
T  5659767 cattttctttatcctaaattataagcaaaaaaagatcaacttttatcatatttaattat 5659709  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 1144712 - 1144679
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||||||||||||||||||||||||| |||||    
T  1144712 aaaaagaccaacttttatcatatttaataatgtt 1144679  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 3464032 - 3463999
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    ||||||| ||||||||||||||||||||||||||    
T  3464032 aaaaagatcaacttttatcatatttaattatgtt 3463999  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 10154144 - 10154111
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||||| |||||||||||||||||||||||||    
T  10154144 aaaaagacaaacttttatcatatttaattatgtt 10154111  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 12912537 - 12912480
Alignment:
Q  190 tcatttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattat 247  Q
    |||||| |||| || ||||||||||| |||||||| | |||||||||| |||||||||    
T  12912537 tcattttctttgtctcaaattataaaaaaaaagactagcttttatcatgtttaattat 12912480  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 16153561 - 16153528
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||||| |||||||||||||||||||||||||    
T  16153561 aaaaagacaaacttttatcatatttaattatgtt 16153528  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 29307405 - 29307372
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||||||| |||||||||||||||||||||||||    
T  29307405 aaaaagactaacttttatcatatttaattatgtt 29307372  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 3103554 - 3103510
Alignment:
Q  205 caaattataaataaaaagaccaacttttatcatatttaattatgt 249  Q
    ||||||||||| |||||  | ||||||||||||||||||||||||    
T  3103554 caaattataaaaaaaaaatctaacttttatcatatttaattatgt 3103510  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 6391814 - 6391850
Alignment:
Q  217 aaaaagaccaacttttatcatatttaattatgttatt 253  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  6391814 aaaaagactaacttttatcataattaattatgttatt 6391850  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 30893583 - 30893531
Alignment:
Q  202 tcccaaattataaataaaaa-gaccaacttttatcatatttaattatgttatt 253  Q
    ||||||||||||| | |||| ||| ||||||| ||||||||||||||||||||    
T  30893583 tcccaaattataagtgaaaacgacaaacttttgtcatatttaattatgttatt 30893531  T

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Target: scaffold0565 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 6114 - 6056
Alignment:
Q  192 atttcctttatcccaaattataaataaaaagaccaacttttatcatatttaattatgtt 250  Q
    |||| |||| |||||| ||||||  ||||| ||||||||||||||||||||||||||||    
T  6114 attttctttgtcccaagttataagcaaaaaaaccaacttttatcatatttaattatgtt 6056  T

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Target: scaffold0330 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 3086 - 3146
Alignment:
Q  191 catttcctttatcccaaattataaataaaaa-gaccaacttttatcatatttaattatgtt 250  Q
    ||||| |||||||| |||||||||  ||||| || ||||||||||||||||||||||||||    
T  3086 cattttctttatcctaaattataagcaaaaaagatcaacttttatcatatttaattatgtt 3146  T

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Target: scaffold1157 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 2090 - 2045
Alignment:
Q  202 tcccaaattataaataaaaagaccaacttttatcatatttaattat 247  Q
    |||||||||||||  |||||||| ||||||| ||||||||||||||    
T  2090 tcccaaattataagcaaaaagacaaacttttgtcatatttaattat 2045  T

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