View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5800_low_2 (Length: 424)

Name: NF5800_low_2
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5800_low_2
NF5800_low_2
[»] chr5 (11 HSPs)
chr5 (20-417)||(36092316-36092702)
chr5 (20-278)||(36086344-36086597)
chr5 (153-278)||(36089947-36090073)
chr5 (20-122)||(36090086-36090190)
chr5 (387-421)||(15988248-15988282)
chr5 (387-418)||(41862934-41862965)
chr5 (387-417)||(8990428-8990458)
chr5 (387-417)||(15232160-15232190)
chr5 (387-417)||(36700858-36700888)
chr5 (387-417)||(43241574-43241604)
chr5 (387-415)||(17064734-17064762)
[»] chr8 (4 HSPs)
chr8 (387-420)||(20285688-20285721)
chr8 (387-420)||(21072317-21072350)
chr8 (387-420)||(39683386-39683419)
chr8 (387-415)||(12838644-12838672)
[»] chr4 (7 HSPs)
chr4 (387-420)||(1363799-1363832)
chr4 (387-417)||(7059434-7059464)
chr4 (387-417)||(37143757-37143787)
chr4 (387-417)||(48736834-48736864)
chr4 (387-417)||(48737128-48737158)
chr4 (387-417)||(48737422-48737452)
chr4 (387-420)||(23775617-23775650)
[»] chr2 (8 HSPs)
chr2 (387-420)||(40497527-40497560)
chr2 (387-417)||(6063412-6063442)
chr2 (387-417)||(35156372-35156402)
chr2 (387-417)||(36080301-36080331)
chr2 (387-417)||(38702203-38702233)
chr2 (387-420)||(18072448-18072481)
chr2 (387-420)||(31593470-31593503)
chr2 (387-420)||(33676694-33676727)
[»] chr1 (6 HSPs)
chr1 (387-420)||(19285394-19285427)
chr1 (387-417)||(5965719-5965749)
chr1 (387-417)||(24561302-24561332)
chr1 (387-417)||(45943366-45943396)
chr1 (387-420)||(115843-115876)
chr1 (387-420)||(42589716-42589749)
[»] chr7 (9 HSPs)
chr7 (389-420)||(48525984-48526015)
chr7 (387-417)||(19397120-19397150)
chr7 (387-417)||(21766169-21766199)
chr7 (387-420)||(5800825-5800858)
chr7 (387-420)||(14624495-14624528)
chr7 (387-420)||(15994040-15994073)
chr7 (387-420)||(39151862-39151895)
chr7 (387-416)||(39389595-39389624)
chr7 (387-420)||(46671100-46671133)
[»] scaffold0734 (2 HSPs)
scaffold0734 (387-420)||(3852-3885)
scaffold0734 (388-416)||(4008-4036)
[»] chr3 (3 HSPs)
chr3 (387-420)||(1708675-1708708)
chr3 (387-420)||(17438718-17438751)
chr3 (387-416)||(21789503-21789532)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 36092702 - 36092316
Alignment:
Q  20 ttggccaagtttcctaagctttctattcatcttttttatttcaatgtatttattagggttcttcaaatgataggtgatggtcttggggtgccaatatagt 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  36092702 ttggccaagttttctaagctttctattcatcttttttatttcaatgtatttattagggttcttcaaatgataggtaatggtcttgggatgtcaatatagt 36092603  T
Q  120 tgagatgtagttactatcatatcatatgacgtctttgtactctaatttttagttaaaagaaaaaagtcttaagccctatgtgcaattatgtacaccgtat 219  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36092602 tgagatgtagttactatcatat-----gacgtctttgtactctaatttttagttaaaagaaaaaagtcttaagccctatgtgcaattatgtacactgtat 36092508  T
Q  220 ctctccctgtttgcttattttcttttaacttagatgtatgaattgatcgttccaatatccatcttatatatctttcaaatnnnnnnnnnnnnnnntgtcc 319  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||    
T  36092507 atctccctgtttgcttattttcttttaacttagatgtatgaattgatcgttccaatatccatcttatatatctttcaaat------aaaaaaaaatgtcc 36092414  T
Q  320 atcttattttgaaagcaccaatacatcttcagttaaccaccaataactttattctgaaagcaacaactttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36092413 atcttattttgaaagcactaatacatcttcagttaaccaccaataactttattctgaatgcaacaactttttgttatattgttggtttcattgaaata 36092316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 36086597 - 36086344
Alignment:
Q  20 ttggccaagtttcctaagctttctattcatcttttttatttcaatgtatttattagggttcttcaaatgataggtgatggtcttgggg----tgccaata 115  Q
    |||||||||||| |||||| |||||||||||||||| ||| |||| |||||||||||||||| || ||||||| |||||| ||||||     ||||||||    
T  36086597 ttggccaagttttctaagccttctattcatcttttt-attccaatatatttattagggttctccatatgatagatgatggccttgggtgagttgccaata 36086499  T
Q  116 tagttgagatgtagttactatcatatcatatgacgtctttgtactctaatttttagttaaaagaaaaaagtcttaagccctatgtgcaattatgtacacc 215  Q
    ||||||| ||   ||||        ||| |||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36086498 tagttgatataccgtta--------tcacatgatgcctttgtactctaatatttagttaaaagaaaaaagtcttaagccctatgtgaaattatgtacacc 36086407  T
Q  216 gtatctctccctgtttgcttattttcttttaacttagatgtatgaattgatcgttccaatatc 278  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36086406 gtatatctccctctttgcttattttcttttaacttagatgtatgaattgatggttccaatatc 36086344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 36090073 - 36089947
Alignment:
Q  153 tttgtactctaatttttagttaaaagaaaaaag-tcttaagccctatgtgcaattatgtacaccgtatctctccctgtttgcttattttcttttaactta 251  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  36090073 tttgtactctaatttttagttaaaagaaaaaaaatcttaagccctatgtgaaattatgtacaccatatatctctctgtttgcttattttcttttaactta 36089974  T
Q  252 gatgtatgaattgatcgttccaatatc 278  Q
    |||||| ||||||||||||||||||||    
T  36089973 gatgtacgaattgatcgttccaatatc 36089947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 36090190 - 36090086
Alignment:
Q  20 ttggccaagtttcctaagctttctattcatcttttttatttcaatgtatttattagggttcttcaaatgataggtgatggtcttgg----ggtgccaata 115  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||  ||||||||||||||| || ||||||| |||||| |||||    | ||||||||    
T  36090190 ttggccaagttttctaagccttctattcatct-ttttatttcaat-aatttattagggttctccatatgatagatgatggccttgggtgagttgccaata 36090093  T
Q  116 tagttga 122  Q
    |||||||    
T  36090092 tagttga 36090086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 421
Target Start/End: Complemental strand, 15988282 - 15988248
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatatt 421  Q
    |||||||||||||||||||||||||||||||||||    
T  15988282 tttttgttatattgttggtttcattgaaatatatt 15988248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 418
Target Start/End: Original strand, 41862934 - 41862965
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatat 418  Q
    ||||||||||||||||||||||||||||||||    
T  41862934 tttttgttatattgttggtttcattgaaatat 41862965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 8990428 - 8990458
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  8990428 tttttgttatattgttggtttcattgaaata 8990458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 15232190 - 15232160
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  15232190 tttttgttatattgttggtttcattgaaata 15232160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 36700858 - 36700888
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  36700858 tttttgttatattgttggtttcattgaaata 36700888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 43241574 - 43241604
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  43241574 tttttgttatattgttggtttcattgaaata 43241604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 17064762 - 17064734
Alignment:
Q  387 tttttgttatattgttggtttcattgaaa 415  Q
    |||||||||||||||||||||||||||||    
T  17064762 tttttgttatattgttggtttcattgaaa 17064734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 20285721 - 20285688
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||||||||||||||||||    
T  20285721 tttttgttatattgttggtttcattgaaatatat 20285688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 21072350 - 21072317
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||||||||||||||||||    
T  21072350 tttttgttatattgttggtttcattgaaatatat 21072317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 39683419 - 39683386
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||| ||||||||||||||    
T  39683419 tttttgttatattgttggtgtcattgaaatatat 39683386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 12838644 - 12838672
Alignment:
Q  387 tttttgttatattgttggtttcattgaaa 415  Q
    |||||||||||||||||||||||||||||    
T  12838644 tttttgttatattgttggtttcattgaaa 12838672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 1363799 - 1363832
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||||||||||||||||||    
T  1363799 tttttgttatattgttggtttcattgaaatatat 1363832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 7059434 - 7059464
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  7059434 tttttgttatattgttggtttcattgaaata 7059464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 37143787 - 37143757
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  37143787 tttttgttatattgttggtttcattgaaata 37143757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 48736864 - 48736834
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  48736864 tttttgttatattgttggtttcattgaaata 48736834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 48737158 - 48737128
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  48737158 tttttgttatattgttggtttcattgaaata 48737128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 48737452 - 48737422
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  48737452 tttttgttatattgttggtttcattgaaata 48737422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 23775650 - 23775617
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||| ||||||||||||||    
T  23775650 tttttgttatattgttggtgtcattgaaatatat 23775617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 40497560 - 40497527
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||||||||||||||||||    
T  40497560 tttttgttatattgttggtttcattgaaatatat 40497527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 6063412 - 6063442
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  6063412 tttttgttatattgttggtttcattgaaata 6063442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 35156372 - 35156402
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  35156372 tttttgttatattgttggtttcattgaaata 35156402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 36080301 - 36080331
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  36080301 tttttgttatattgttggtttcattgaaata 36080331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 38702233 - 38702203
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  38702233 tttttgttatattgttggtttcattgaaata 38702203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 18072448 - 18072481
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    |||| |||||||||||||||||||||||||||||    
T  18072448 ttttcgttatattgttggtttcattgaaatatat 18072481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 31593503 - 31593470
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||| ||||||||||||||    
T  31593503 tttttgttatattgttggtgtcattgaaatatat 31593470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 33676727 - 33676694
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||| ||||||||||||||    
T  33676727 tttttgttatattgttggtgtcattgaaatatat 33676694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 19285427 - 19285394
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||||||||||||||||||    
T  19285427 tttttgttatattgttggtttcattgaaatatat 19285394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 5965749 - 5965719
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  5965749 tttttgttatattgttggtttcattgaaata 5965719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 24561302 - 24561332
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  24561302 tttttgttatattgttggtttcattgaaata 24561332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 45943366 - 45943396
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  45943366 tttttgttatattgttggtttcattgaaata 45943396  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 115876 - 115843
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||| ||||||||||||||    
T  115876 tttttgttatattgttggtgtcattgaaatatat 115843  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 42589749 - 42589716
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||| ||||||||||||||    
T  42589749 tttttgttatattgttggtgtcattgaaatatat 42589716  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 420
Target Start/End: Original strand, 48525984 - 48526015
Alignment:
Q  389 tttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||||||||||||||||    
T  48525984 tttgttatattgttggtttcattgaaatatat 48526015  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 19397120 - 19397150
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  19397120 tttttgttatattgttggtttcattgaaata 19397150  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 21766199 - 21766169
Alignment:
Q  387 tttttgttatattgttggtttcattgaaata 417  Q
    |||||||||||||||||||||||||||||||    
T  21766199 tttttgttatattgttggtttcattgaaata 21766169  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 5800825 - 5800858
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    |||||||||||||||| |||||||||||||||||    
T  5800825 tttttgttatattgtttgtttcattgaaatatat 5800858  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 14624528 - 14624495
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    |||||||||||||||| |||||||||||||||||    
T  14624528 tttttgttatattgttagtttcattgaaatatat 14624495  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 15994073 - 15994040
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||| ||||||||||||||    
T  15994073 tttttgttatattgttggtgtcattgaaatatat 15994040  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 39151862 - 39151895
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||| ||||||||||||||    
T  39151862 tttttgttatattgttggtgtcattgaaatatat 39151895  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 39389595 - 39389624
Alignment:
Q  387 tttttgttatattgttggtttcattgaaat 416  Q
    ||||||||||||||||||||||||||||||    
T  39389595 tttttgttatattgttggtttcattgaaat 39389624  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 46671133 - 46671100
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||| ||||||||||||||||    
T  46671133 tttttgttatattgttgatttcattgaaatatat 46671100  T

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Target: scaffold0734 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 3852 - 3885
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||||||||||||||||||||||||||| ||||    
T  3852 tttttgttatattgttggtttcattgaaacatat 3885  T

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Target: scaffold0734; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 416
Target Start/End: Complemental strand, 4036 - 4008
Alignment:
Q  388 ttttgttatattgttggtttcattgaaat 416  Q
    |||||||||||||||||||||||||||||    
T  4036 ttttgttatattgttggtttcattgaaat 4008  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 1708708 - 1708675
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    |||||||||||||||||| |||||||||||||||    
T  1708708 tttttgttatattgttggcttcattgaaatatat 1708675  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 17438751 - 17438718
Alignment:
Q  387 tttttgttatattgttggtttcattgaaatatat 420  Q
    ||||| ||||||||||||||||||||||||||||    
T  17438751 tttttattatattgttggtttcattgaaatatat 17438718  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 416
Target Start/End: Complemental strand, 21789532 - 21789503
Alignment:
Q  387 tttttgttatattgttggtttcattgaaat 416  Q
    ||||||||||||||||||||||||||||||    
T  21789532 tttttgttatattgttggtttcattgaaat 21789503  T

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