View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5800_low_3 (Length: 317)
Name: NF5800_low_3
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5800_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 4046207 - 4046015
Alignment:
| Q |
22 |
cataatcagataatctccggggtagagcattgtcacaacaatatggtggctcatagagacttaaagccagaaactatacttttggactcaaaattcaata |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4046207 |
cataatcagataatctccggggtacagcattgtcacaacaatatggtggctcatagagacttaaagcctgaaactatacttttggactcaaaattcaata |
4046108 |
T |
|
| Q |
122 |
tcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4046107 |
tcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg |
4046015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 4125076 - 4125201
Alignment:
| Q |
91 |
gaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagatgtggaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4125076 |
gaaactatacttttggactcaaaatttaatgtcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagttgtggaa |
4125175 |
T |
|
| Q |
191 |
gtct--taactatgcagctcctgagg |
214 |
Q |
| |
|
|||| |||||||| ||||||||||| |
|
|
| T |
4125176 |
gtcttataactatgaagctcctgagg |
4125201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 4105576 - 4105711
Alignment:
| Q |
74 |
atagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagttact |
173 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||| || |||||| |
|
|
| T |
4105576 |
atagagacttaaagtcggaaactatacttttggactcaaaattcaatgtcaagattactaattttggctttagcaacacaatgcagcatgatcggttact |
4105675 |
T |
|
| Q |
174 |
taagac-aagatgtggaagtcttaactatgcagctc |
208 |
Q |
| |
|
|||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
4105676 |
taagacaaagttgtgaaagtcttaactatgcagctc |
4105711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 4054637 - 4054484
Alignment:
| Q |
61 |
aatatggtggctcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaac |
160 |
Q |
| |
|
|||||||| | |||||||||||| ||||| || | | |||||||||||||||||| | | |||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
4054637 |
aatatggtagttcatagagacttgaagcctgagaatttacttttggactcaaaatggagtgtcaagattgctgattttggcctgagcaacatcatgcgtg |
4054538 |
T |
|
| Q |
161 |
atggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg |
214 |
Q |
| |
|
|||| || || ||||||||||| |||||||| | ||||||||||||||| |||| |
|
|
| T |
4054537 |
atggccactttcttaagacaagttgtggaagccctaactatgcagctcccgagg |
4054484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 17404425 - 17404578
Alignment:
| Q |
61 |
aatatggtggctcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaac |
160 |
Q |
| |
|
|||||||| | |||||||||| | || || |||| | |||||||||||||||||| | | |||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
17404425 |
aatatggtagttcatagagacctgaaacccgaaaatttacttttggactcaaaatggagtgtcaagattgctgattttggcctgagcaacatcatgcgtg |
17404524 |
T |
|
| Q |
161 |
atggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg |
214 |
Q |
| |
|
||||||| || ||||||||||| || ||||| | |||||||||||||| |||| |
|
|
| T |
17404525 |
atggtcactttcttaagacaagttgcggaagccccaactatgcagctccagagg |
17404578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 4105522 - 4105470
Alignment:
| Q |
54 |
tcacaacaatatggtggctcatagagacttaaag-ccagaaactatacttttg |
105 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
4105522 |
tcacagcaatatggtggctcatagaaacttaaagcccggaaactatacttttg |
4105470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 45865918 - 45865729
Alignment:
| Q |
25 |
aatcagataatctccggggtagagcattgtcacaacaatatggtggctcatagagacttaaagccagaaactatacttttggactcaaaattcaatatca |
124 |
Q |
| |
|
|||||||||||||| || || ||| | |||||||| | |||||| |||||||||||| | || || |||| ||||||||||||||||||| | | ||| |
|
|
| T |
45865918 |
aatcagataatctctggtgtggagtactgtcacaagactatggtagctcatagagacctgaaacctgaaaatatacttttggactcaaaaaagagtgtca |
45865819 |
T |
|
| Q |
125 |
agattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg |
214 |
Q |
| |
|
| ||| |||||||||||||||||| || |||| ||||||| |||||||| ||||| |||||||| | ||||||||||||||| |||| |
|
|
| T |
45865818 |
aaattgctgattttggcttgagcagcaacatgcgtgatggtcacttacttaatacaagttgtggaagccctaactatgcagctccagagg |
45865729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University