View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5800_low_5 (Length: 283)
Name: NF5800_low_5
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5800_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 18405840 - 18405587
Alignment:
| Q |
17 |
attacacctcaaaatggtttgaaacaacgaacatggttaaaaccaatggccaaaaattggaattaagtgttcaagtagtcataaactcaagttgaacctg |
116 |
Q |
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| T |
18405840 |
attacacctcaaaatggtttgaaacaacgaacatggttaaaaccaatgtccaaaaattggaattaagtgttcaagtagtcataaactcaagttgaacctg |
18405741 |
T |
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| Q |
117 |
tctaaagctcaagccttcatgaagaaatttgttgataaagagaatggtccttgttaagctccaaccttatcaaaccttgcaagggtgatcattttattcc |
216 |
Q |
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| T |
18405740 |
tctaaagctcaacccttcatgaagaaatttgttgat-aagagaatggtccttgttaagctccaaccttatcaaaccttgcaagggtgatcattttattcc |
18405642 |
T |
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| Q |
217 |
ctatctatcattaccactgctgcagcagaatgaacatggaccactgttcgtgcct |
271 |
Q |
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| T |
18405641 |
ctatctatcattaccactgctgcagcagaatgaacatggaccactgttcgtgcct |
18405587 |
T |
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