View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5800_low_7 (Length: 251)

Name: NF5800_low_7
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5800_low_7
NF5800_low_7
[»] chr2 (2 HSPs)
chr2 (13-251)||(32983929-32984167)
chr2 (85-144)||(6042067-6042126)
[»] chr4 (1 HSPs)
chr4 (20-76)||(5232497-5232553)
[»] chr7 (2 HSPs)
chr7 (85-144)||(7680797-7680856)
chr7 (85-144)||(40702668-40702727)
[»] chr3 (1 HSPs)
chr3 (88-144)||(46279532-46279588)
[»] chr1 (1 HSPs)
chr1 (85-144)||(33999902-33999961)
[»] chr8 (2 HSPs)
chr8 (88-141)||(16594220-16594273)
chr8 (85-146)||(30732373-30732434)
[»] chr5 (1 HSPs)
chr5 (85-145)||(40079528-40079588)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 32983929 - 32984167
Alignment:
Q  13 aatatgatatttatagaaaactttggggatgcagtggcttctatgagtctccaaggagatccgctactaagactgagtatgggttgaacccgggagcgtg 112  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  32983929 aatatgatatttatagaaaactttggggatatagtggcttctatgagtctccaaggagatccgccactgagactgagtatgggttgaacccgggagcgtg 32984028  T
Q  113 ctcaagctaactgggtggtaaatccgcccctgatcatgttacatactcttggccagcagtagtatgcgacaaggaaggcagtatatatattaattgctta 212  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32984029 cccaagctaactgggtggtaaatccgcccctgatcatgttacatactcttggccagcagtagtatgcgacaaggaaggcagtatatatattaattgctta 32984128  T
Q  213 caaacctagaatacacgctatgattattagcatatccat 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32984129 caaacctagaatacacgctatgattattagcatatccat 32984167  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 6042126 - 6042067
Alignment:
Q  85 ctgagtatgggttgaacccgggagcgtgctcaagctaactgggtggtaaatccgcccctg 144  Q
    |||||||||||| || |||||| |||||| || |||| ||||||||||||||||||||||    
T  6042126 ctgagtatgggtagagcccgggcgcgtgcccaggctagctgggtggtaaatccgcccctg 6042067  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 5232497 - 5232553
Alignment:
Q  20 tatttatagaaaactttggggatgcagtggcttctatgagtctccaaggagatccgc 76  Q
    ||||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||    
T  5232497 tatttatagaaaagttagggggtgcagtggctcctatgggtctccaaggagatccgc 5232553  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 7680797 - 7680856
Alignment:
Q  85 ctgagtatgggttgaacccgggagcgtgctcaagctaactgggtggtaaatccgcccctg 144  Q
    ||||||| ||||||| |||||| |||||| ||||||| |||||||||||||||| |||||    
T  7680797 ctgagtaggggttgagcccgggcgcgtgcccaagctagctgggtggtaaatccgtccctg 7680856  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 40702727 - 40702668
Alignment:
Q  85 ctgagtatgggttgaacccgggagcgtgctcaagctaactgggtggtaaatccgcccctg 144  Q
    |||||| |||||||| |||||| | |||| || |||| ||||||||||||||||||||||    
T  40702727 ctgagtgtgggttgagcccgggcgtgtgcccaggctagctgggtggtaaatccgcccctg 40702668  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 46279532 - 46279588
Alignment:
Q  88 agtatgggttgaacccgggagcgtgctcaagctaactgggtggtaaatccgcccctg 144  Q
    |||||||||||| ||| || |||||| || |||| ||||||||||||||||||||||    
T  46279532 agtatgggttgagcccaggcgcgtgcccaggctagctgggtggtaaatccgcccctg 46279588  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 33999961 - 33999902
Alignment:
Q  85 ctgagtatgggttgaacccgggagcgtgctcaagctaactgggtggtaaatccgcccctg 144  Q
    ||||| ||||||||| |||||| |||||| || ||||  |||||||||||||||||||||    
T  33999961 ctgagcatgggttgagcccgggcgcgtgcccaggctagttgggtggtaaatccgcccctg 33999902  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 16594273 - 16594220
Alignment:
Q  88 agtatgggttgaacccgggagcgtgctcaagctaactgggtggtaaatccgccc 141  Q
    ||||| |||||| |||||| ||||||||| |||| |||||||||||| ||||||    
T  16594273 agtatcggttgagcccgggcgcgtgctcaggctagctgggtggtaaaaccgccc 16594220  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 30732373 - 30732434
Alignment:
Q  85 ctgagtatgggttgaacccgggagcgtgctcaagctaactgggtggtaaatccgcccctgat 146  Q
    ||||||||||||||| |||||  |||||| || |||| ||||||||| ||||||||| ||||    
T  30732373 ctgagtatgggttgagcccggacgcgtgcccaggctagctgggtggtgaatccgcccatgat 30732434  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 40079588 - 40079528
Alignment:
Q  85 ctgagtatgggttgaacccgggagcgtgctcaagctaactgggtggtaaatccgcccctga 145  Q
    |||||||||| | || |||||| |||||| || |||| |||||||||||||| ||||||||    
T  40079588 ctgagtatggatagagcccgggcgcgtgcccaggctagctgggtggtaaatctgcccctga 40079528  T

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