View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5800_low_8 (Length: 249)

Name: NF5800_low_8
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5800_low_8
NF5800_low_8
[»] chr1 (8 HSPs)
chr1 (4-238)||(18405340-18405574)
chr1 (41-149)||(18420133-18420236)
chr1 (101-144)||(18409994-18410037)
chr1 (32-151)||(18423533-18423652)
chr1 (87-151)||(18433655-18433719)
chr1 (42-151)||(18437798-18437907)
chr1 (42-151)||(18448656-18448765)
chr1 (42-151)||(18453749-18453858)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 18405574 - 18405340
Alignment:
Q  4 cagagtcataaacttgatttccaattgttgttcggatcgattaaagaggaaggaaaaggcgtgtatgtagtattccattatgttagttgagaagtctcac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18405574 cagagtcataaacttgatttccaattgttgttcggatcgattaaagaggaaggaaaaggcgtgtatgtagcattccattatgttagttgagaagtctcac 18405475  T
Q  104 atcgaaagtttataaacaacatacacaaacatgtacctatataagaggaccgtgtataccgttgtttgcacgcattgtttatcacatattagcggaccca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  18405474 atcgaaagtttataaacaacatacacaaacatgtacctatataagaggaccgtgtataccgttgtttgctcacattgtttatcacatattagcggaccca 18405375  T
Q  204 tgttttacattggagttgtcccatgaattctagta 238  Q
    ||||||| |||||||||||||||||||||||||||    
T  18405374 tgttttatattggagttgtcccatgaattctagta 18405340  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 18420236 - 18420133
Alignment:
Q  41 cgattaaagaggaaggaaaaggcgtgtatgtagtattccattatgttagttgagaagtctcacatcgaaagtttataaacaacatacacaaacatgtacc 140  Q
    |||||||||||||||||| |||  |||||     |||||||||   ||||| ||||||| ||||||||| |||| |||||| |||| |||| ||||||||    
T  18420236 cgattaaagaggaaggaagagggatgtat-----attccattacagtagttcagaagtcccacatcgaaggtttgtaaacatcataaacaaccatgtacc 18420142  T
Q  141 tatataaga 149  Q
    |||| ||||    
T  18420141 tataaaaga 18420133  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 18410037 - 18409994
Alignment:
Q  101 cacatcgaaagtttataaacaacatacacaaacatgtacctata 144  Q
    |||||||||||| | ||||||||||| |||||||||||||||||    
T  18410037 cacatcgaaagtgtgtaaacaacatagacaaacatgtacctata 18409994  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 18423652 - 18423533
Alignment:
Q  32 tgttcggatcgattaaagaggaaggaaaaggcgtgtatgtagtattccattatgttagttgagaa---gtctcacatcgaaagtttataaacaacataca 128  Q
    |||| ||| |||||||||||||||||| |||| |||||   |||||| |||||| ||||| ||||   ||| ||||| |||||| | |||||||| || |    
T  18423652 tgtttggagcgattaaagaggaaggaagaggcatgtat---gtattctattatggtagttcagaagttgtcccacattgaaagtgtgtaaacaacgtaga 18423556  T
Q  129 caaacatgtacctatataagagg 151  Q
    ||||||||||  |||| ||||||    
T  18423555 caaacatgtatgtataaaagagg 18423533  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 18433719 - 18433655
Alignment:
Q  87 tagttgagaagtctcacatcgaaagtttataaacaacatacacaaacatgtacctatataagagg 151  Q
    ||||| ||||||| |||||| || |||| |||||| |||| |||| |||||||||||| ||||||    
T  18433719 tagttcagaagtcccacatcaaaggtttgtaaacagcatagacaaccatgtacctataaaagagg 18433655  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 18437907 - 18437798
Alignment:
Q  42 gattaaagaggaaggaaaaggcgtgtatgtagtattccattatgttagttgagaagt---ctcacatcgaaagtttataaacaacatacacaaacatgta 138  Q
    ||||||||||||||||| |||| |||||||| | |   |||||| ||||| ||||||   | |||||||||||| | |||||||| || |||||||||||    
T  18437907 gattaaagaggaaggaagaggcatgtatgtatttt---attatggtagttcagaagttgtcccacatcgaaagtgtgtaaacaacgtagacaaacatgta 18437811  T
Q  139 cctatataagagg 151  Q
      |||| ||||||    
T  18437810 tatataaaagagg 18437798  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 18448765 - 18448656
Alignment:
Q  42 gattaaagaggaaggaaaaggcgtgtatgtagtattccattatgttagttgagaagt---ctcacatcgaaagtttataaacaacatacacaaacatgta 138  Q
    ||||||||||||||||| |||| |||||||| | |   |||||| ||||| ||||||   | |||||||||||| | |||||||| || |||||||||||    
T  18448765 gattaaagaggaaggaagaggcatgtatgtatttt---attatggtagttcagaagttgtcccacatcgaaagtgtgtaaacaacgtagacaaacatgta 18448669  T
Q  139 cctatataagagg 151  Q
      |||| ||||||    
T  18448668 tatataaaagagg 18448656  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 18453858 - 18453749
Alignment:
Q  42 gattaaagaggaaggaaaaggcgtgtatgtagtattccattatgttagttgagaagt---ctcacatcgaaagtttataaacaacatacacaaacatgta 138  Q
    ||||||||||||||||| |||| |||||||| | |   |||||| ||||| ||||||   | |||||||||||| | |||||||| || |||||||||||    
T  18453858 gattaaagaggaaggaagaggcatgtatgtatttt---attatggtagttcagaagttgtcccacatcgaaagtgtgtaaacaacgtagacaaacatgta 18453762  T
Q  139 cctatataagagg 151  Q
      |||| ||||||    
T  18453761 tatataaaagagg 18453749  T

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