View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5801-Insertion-5 (Length: 1027)

Name: NF5801-Insertion-5
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5801-Insertion-5
NF5801-Insertion-5
[»] scaffold0200 (1 HSPs)
scaffold0200 (12-1001)||(29935-30926)
[»] chr1 (1 HSPs)
chr1 (491-566)||(43328455-43328528)
[»] chr3 (4 HSPs)
chr3 (524-566)||(35335589-35335631)
chr3 (528-566)||(20691307-20691345)
chr3 (526-567)||(651425-651466)
chr3 (524-565)||(17105251-17105292)
[»] chr7 (2 HSPs)
chr7 (528-565)||(927870-927907)
chr7 (528-566)||(30516390-30516428)
[»] chr6 (4 HSPs)
chr6 (524-565)||(7250992-7251033)
chr6 (524-572)||(8146665-8146713)
chr6 (524-566)||(3963521-3963563)
chr6 (528-566)||(10760874-10760912)
[»] chr8 (3 HSPs)
chr8 (507-557)||(30585114-30585163)
chr8 (529-566)||(11815817-11815854)
chr8 (497-562)||(16330973-16331037)
[»] chr4 (2 HSPs)
chr4 (524-566)||(43843639-43843681)
chr4 (493-566)||(7367541-7367613)


Alignment Details
Target: scaffold0200 (Bit Score: 904; Significance: 0; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 904; E-Value: 0
Query Start/End: Original strand, 12 - 1001
Target Start/End: Original strand, 29935 - 30926
Alignment:
Q  12 atatcatgcacatgatctataattgattgatcaaaattaaaatcaaactttatatgctttcatttaatgtttacctgcttaaatcactgatatgttcaag 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29935 atatcatgcccatgatctataattgattgatcaaaattaaaattaaactttatatgctttcatttaatgtttacctgcttaaatcactgatatgttcaag 30034  T
Q  112 acagtgatcatgcccattcatgtaaaaatcaacatgatctgcctgaaatttgatagtaaattcatcagtgtttaaaataagaatagagaaagggaagatc 211  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  30035 acagtgatcatgcccattcatgtaaaaatcaacatgatttgcctgaaatttgatagtaacttcatcagtgtttaaaataagaatagagaaaaggaagatc 30134  T
Q  212 atgttattcattcatcttaatctcagttttatctttacctgaagaattggaagaagcaggttaacaagttctttagtatcaccatgatgaccagcacttc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30135 atgttattcattcatcttaatctcagttttatctttacctgaagaattggaagaagcaggttaacaagttctttagtatcaccatgatgaccagcacttc 30234  T
Q  312 taattgcatggtgaccaacaacaatcttccactttgctgttgattctctcaataccatttctacatcctggaacataataatccaaaatattgttatgta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30235 taattgcatggtgaccaacaacaatcttccactttgctgttgattctctcaatgccatttctacatcctggaacataataatccaaaatattgttatgta 30334  T
Q  412 aatcttaacttcaaccaactatatagcaccgacattttagattaaaggcgtgtctggtgtccgacttctgtatcaatgtcacgacactgactcatgtgtt 511  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |    
T  30335 aatcttaacttcaaccacctatatagcaccaacattttagattaaaggcgtgtctggtgtccgacttctgtatcaacgtcacgacactgattcatgtggt 30434  T
Q  512 tacatttaagtaactttcattttctcaaattattattagtgtctacgtgtcagtgaaatgtctaatgcctatgtcatgtatcggtaatttatagtctacc 611  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30435 tacatttaagtaactttcattttctcaagttattattagtgtctacgtgtcagtgacatgtctaatgcctatgtcatgtatcggtaatttatagtctacc 30534  T
Q  612 actaatgtcagatgaatgcaccatttttagtcacttgttgtaataaaattccattacaaagtaaactaggaagtaggaacaaatgctattagcttgaatc 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30535 actaatgtcagatgaatgcaccatttttagtcacttgttgtaataaaattccattacaaagtaaactaggaagtaggaacaaatgctgttagcttgaatc 30634  T
Q  712 caattgaaatatagaacttttcaaattagaatgatccttcagaagcactctcaatttaaaatttggatatcatgtgccctgctccacaatgtagaataat 811  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30635 caattgaaatatagaacttttcaaattagaatgatccttcagaaacactctcaatttaaaatttggatatcatgtgccctgctccacaatgtagaataat 30734  T
Q  812 gagtgtatgaagcaccaaaacaaatacgaatacttaaaacgacaattacactgacgcggcaataataatattttgagaaatagaag-aattaaatataat 910  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30735 gagtgtatgaagcaccgaaacaaatacgaatacttaaaacgacaattacactgacgcggcaataataatattttgagaaatagaagaaattaaatataat 30834  T
Q  911 gtatttgtgttgcgccggtgtccgacaccgacacatgtcaaacactatactcatatttaatct-aagtgtcagtgctacataatataaatac 1001  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30835 gtatttgtgtcgtgccggtgtccgacaccgacacatgtcaaacactatactcatatttaatctaaagtgtcagtgctacataatataaatac 30926  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 566
Target Start/End: Complemental strand, 43328528 - 43328455
Alignment:
Q  491 cacgacactgactcatgtgtttacatttaagtaactttcattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    ||||||| |||| |||||| ||||||| || ||  |||||||||||||||||||||| |||||| |||||||||||    
T  43328528 cacgacaatgacacatgtggttacattaaatta--tttcattttctcaaattattataagtgtcaacgtgtcagtg 43328455  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 524 - 566
Target Start/End: Complemental strand, 35335631 - 35335589
Alignment:
Q  524 actttcattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  35335631 actttcattttctcaaattattactagtgtctatgtgtcagtg 35335589  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 528 - 566
Target Start/End: Complemental strand, 20691345 - 20691307
Alignment:
Q  528 tcattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  20691345 tcattttctcaaattattatcagtttctacgtgtcagtg 20691307  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 567
Target Start/End: Original strand, 651425 - 651466
Alignment:
Q  526 tttcattttctcaaattattattagtgtctacgtgtcagtga 567  Q
    ||||||||||||| ||||||| | ||||||||||||||||||    
T  651425 tttcattttctcatattattagtggtgtctacgtgtcagtga 651466  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 524 - 565
Target Start/End: Complemental strand, 17105292 - 17105251
Alignment:
Q  524 actttcattttctcaaattattattagtgtctacgtgtcagt 565  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||    
T  17105292 acttttattttcttaaattattattagtgtctatgtgtcagt 17105251  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 528 - 565
Target Start/End: Original strand, 927870 - 927907
Alignment:
Q  528 tcattttctcaaattattattagtgtctacgtgtcagt 565  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  927870 tcattttctcaaattattattagtgtcgacgtgtcagt 927907  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 528 - 566
Target Start/End: Original strand, 30516390 - 30516428
Alignment:
Q  528 tcattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  30516390 tcattttctcaaattattgttagtgtcgacgtgtcagtg 30516428  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 524 - 565
Target Start/End: Original strand, 7250992 - 7251033
Alignment:
Q  524 actttcattttctcaaattattattagtgtctacgtgtcagt 565  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  7250992 actttcattttctcaaattattattggtgtcaacgtgtcagt 7251033  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 524 - 572
Target Start/End: Original strand, 8146665 - 8146713
Alignment:
Q  524 actttcattttctcaaattattattagtgtctacgtgtcagtgaaatgt 572  Q
    |||||| |||||||||||||| || ||||||||||| ||||||||||||    
T  8146665 actttctttttctcaaattatgatcagtgtctacgtatcagtgaaatgt 8146713  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 524 - 566
Target Start/End: Original strand, 3963521 - 3963563
Alignment:
Q  524 actttcattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||    
T  3963521 actttcattttcttaaattattattggtgtctacgtgtgagtg 3963563  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 528 - 566
Target Start/End: Original strand, 10760874 - 10760912
Alignment:
Q  528 tcattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  10760874 tcattttctcaaattattatcagtgtcgacgtgtcagtg 10760912  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 30585114 - 30585163
Alignment:
Q  507 gtgtttacatttaagtaactttcattttctcaaattattattagtgtctac 557  Q
    ||||||||||| || | ||||||||||||| ||||||||||||||||||||    
T  30585114 gtgtttacattcaa-tcactttcattttcttaaattattattagtgtctac 30585163  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 529 - 566
Target Start/End: Complemental strand, 11815854 - 11815817
Alignment:
Q  529 cattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  11815854 cattttctcaaattattattggtgtcaacgtgtcagtg 11815817  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 497 - 562
Target Start/End: Complemental strand, 16331037 - 16330973
Alignment:
Q  497 actgactcatgtgtttacatttaagtaactttcattttctcaaattattattagtgtctacgtgtc 562  Q
    |||||| |||||| |||||||||| | | ||||||||||| ||||||||| |||||||||| ||||    
T  16331037 actgacacatgtggttacatttaa-tcattttcattttcttaaattattactagtgtctacatgtc 16330973  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 524 - 566
Target Start/End: Original strand, 43843639 - 43843681
Alignment:
Q  524 actttcattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||    
T  43843639 acttttattttctcaaattattattggtgtctacgtgttagtg 43843681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 7367613 - 7367541
Alignment:
Q  493 cgacactgactcatgtgtttacatttaagtaactttcattttctcaaattattattagtgtctacgtgtcagtg 566  Q
    |||||||||| |||||| |||| || || | || |||||||||||||||||||||| ||||||| |||| ||||    
T  7367613 cgacactgacacatgtggttacgttcaa-tcaccttcattttctcaaattattattggtgtctatgtgttagtg 7367541  T

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