View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5801_high_3 (Length: 266)
Name: NF5801_high_3
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5801_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 38059424 - 38059184
Alignment:
| Q |
18 |
acattgctcattccacaatccatgtgtttcaaattttgcttataaatatagattgctcactcttctctattctccttctcata--ccctcaactcaaata |
115 |
Q |
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| T |
38059424 |
acattgctcattccacaatccatgtgtttcaaattttgcttataaatatagattgctcactcttctctattctccttctcatataccctcaactcaaata |
38059325 |
T |
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| Q |
116 |
ggtgatgcactaaagggtggtctcaagattttgtcttaggtccttctttcactgattcatgtaagttattattcatccttataattttcatgctcttgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38059324 |
ggtgatgcactaaagggtggtctcaagattttgtcttaggtccttctttcactgattcatgtaagttattattcatccttataattttcatgctcttgtt |
38059225 |
T |
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| Q |
216 |
ttgatttgatgcatttctatctttctttgacatttcctatg |
256 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38059224 |
ttgatttgatgcatttctatctttctttgacattttctatg |
38059184 |
T |
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